Variant report

Variant	rs72669992
Chromosome Location	chr4:106579154-106579155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106577459..106579904-chr4:106585489..106587073,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11724839	0.83[EUR][1000 genomes]
rs11725523	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11726569	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11727189	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11727735	0.83[EUR][1000 genomes]
rs11728044	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11729003	0.83[EUR][1000 genomes]
rs11731386	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11735213	0.92[AMR][1000 genomes]
rs11737335	0.83[EUR][1000 genomes]
rs11737741	0.83[EUR][1000 genomes]
rs12374256	0.81[EUR][1000 genomes]
rs1374531	0.92[AMR][1000 genomes]
rs17035917	0.82[AMR][1000 genomes]
rs17035960	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17035971	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036027	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036052	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036066	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17036076	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036090	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036105	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036120	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036123	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036125	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036129	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036139	0.83[EUR][1000 genomes]
rs17036142	0.83[EUR][1000 genomes]
rs34072732	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35370743	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4373160	0.83[EUR][1000 genomes]
rs72669971	0.81[EUR][1000 genomes]
rs72669972	0.82[AMR][1000 genomes]
rs72669974	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669978	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669980	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669981	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669982	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669986	0.84[EUR][1000 genomes]
rs72669993	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72669995	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72669997	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72669998	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72670002	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671805	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671808	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671809	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671810	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671811	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671815	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671820	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671824	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671826	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671828	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671835	0.83[EUR][1000 genomes]
rs72671836	0.83[EUR][1000 genomes]
rs72671837	0.83[EUR][1000 genomes]
rs72671840	0.83[EUR][1000 genomes]
rs72671844	0.83[EUR][1000 genomes]
rs72671849	0.83[EUR][1000 genomes]
rs72671852	0.83[EUR][1000 genomes]
rs72671853	0.81[EUR][1000 genomes]
rs72671854	0.83[EUR][1000 genomes]
rs72671855	0.83[EUR][1000 genomes]
rs72671856	0.83[EUR][1000 genomes]
rs72671858	0.83[EUR][1000 genomes]
rs72671861	0.83[EUR][1000 genomes]
rs72671862	0.83[EUR][1000 genomes]
rs72671863	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3467298	chr4:106577722-106583287	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3467299	chr4:106577722-106583287	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv14749	chr4:106577867-106583120	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:106569800-106600400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:106574400-106585400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:106576600-106581400	Strong transcription	Fetal Intestine Large	intestine
7	chr4:106577800-106579200	Enhancers	NHEK	skin
8	chr4:106578200-106579200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:106578200-106588200	Weak transcription	Pancreas	Pancrea
10	chr4:106578600-106580200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:106578600-106607000	Weak transcription	Small Intestine	intestine
12	chr4:106578800-106579400	Enhancers	HMEC	breast
13	chr4:106579000-106580600	Enhancers	Stomach Mucosa	stomach

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