Variant report

Variant	rs17035960
Chromosome Location	chr4:106531846-106531847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106483518..106485552-chr4:106531782..106533703,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10516525	0.88[CEU][hapmap]
rs10516526	0.88[CEU][hapmap]
rs11097901	0.82[CEU][hapmap]
rs11724839	0.88[CEU][hapmap]
rs11725523	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726569	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs11727189	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs11727348	0.88[CEU][hapmap]
rs11727735	0.88[CEU][hapmap]
rs11727745	0.88[CEU][hapmap]
rs11728044	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs11731386	0.80[AMR][1000 genomes]
rs11732298	0.88[CEU][hapmap]
rs11733225	0.86[CEU][hapmap]
rs11733287	0.88[CEU][hapmap]
rs11735213	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11735851	0.88[CEU][hapmap]
rs11736859	0.88[CEU][hapmap]
rs12374256	0.88[CEU][hapmap]
rs1374531	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17035917	0.88[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17035971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036027	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036052	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036066	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036076	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036090	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036105	0.84[AMR][1000 genomes]
rs17036120	0.80[AMR][1000 genomes]
rs17036123	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs17036125	0.80[AMR][1000 genomes]
rs17036129	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs17036139	0.88[CEU][hapmap]
rs17036142	0.88[CEU][hapmap]
rs17036156	0.88[CEU][hapmap]
rs17036225	0.88[CEU][hapmap]
rs17036230	0.88[CEU][hapmap]
rs199332	0.90[TSI][hapmap]
rs34072732	0.80[AMR][1000 genomes]
rs35370743	0.84[AMR][1000 genomes]
rs72669961	0.85[EUR][1000 genomes]
rs72669971	0.87[EUR][1000 genomes]
rs72669972	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72669974	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669978	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669980	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669981	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669982	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72669986	0.90[EUR][1000 genomes]
rs72669992	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669993	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72669995	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72669997	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72669998	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72670002	0.91[AMR][1000 genomes]
rs72671805	0.80[AMR][1000 genomes]
rs72671808	0.80[AMR][1000 genomes]
rs72671809	0.80[AMR][1000 genomes]
rs72671810	0.84[AMR][1000 genomes]
rs72671811	0.80[AMR][1000 genomes]
rs72671815	0.80[AMR][1000 genomes]
rs72671820	0.84[AMR][1000 genomes]
rs72671824	0.80[AMR][1000 genomes]
rs72671826	0.84[AMR][1000 genomes]
rs72671828	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
5	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea
6	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
7	chr4:106527200-106534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
9	chr4:106527400-106542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:106531400-106532200	Enhancers	Stomach Mucosa	stomach
11	chr4:106531400-106534400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:106531800-106532000	Enhancers	Fetal Kidney	kidney

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