Variant report

Variant	rs11097901
Chromosome Location	chr4:106729933-106729934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106727565..106731527-chr4:106732555..106735399,4	K562	blood:
2	chr4:106727565..106729964-chr4:106733193..106735167,2	K562	blood:

Extended variants
information (count: 156 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10050159	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10050333	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10516525	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516526	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516527	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516528	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516529	0.90[EUR][1000 genomes]
rs11722225	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723225	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11723240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11723639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11724839	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11724884	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726094	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726124	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726569	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726674	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727189	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727348	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727735	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727745	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728044	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11728716	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11729003	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730354	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11730365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11730660	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11731386	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11731714	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731938	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732298	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732629	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732650	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733093	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733124	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733150	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733223	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733287	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11734568	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734571	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11735527	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11735851	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11736834	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11736859	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11737335	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11737741	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12374256	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17035960	0.82[CEU][hapmap]
rs17036090	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17036105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036120	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036123	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036125	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036129	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036139	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036142	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036156	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036177	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036189	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036225	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036230	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036292	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036308	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036310	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036327	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036337	0.84[AMR][1000 genomes]
rs17036341	0.90[EUR][1000 genomes]
rs17331332	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28488297	0.90[EUR][1000 genomes]
rs34072732	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35370743	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35808787	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4373160	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58775257	0.90[EUR][1000 genomes]
rs59462153	0.87[EUR][1000 genomes]
rs67277942	0.90[EUR][1000 genomes]
rs72669993	0.80[AMR][1000 genomes]
rs72669995	0.80[AMR][1000 genomes]
rs72669997	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72669998	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72670002	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72671805	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671808	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671809	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671810	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671811	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671815	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671820	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671824	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671826	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671828	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671835	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671836	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671837	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671840	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671844	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671849	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671852	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671853	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671854	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671855	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671856	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671858	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671861	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671862	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671863	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671866	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671869	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671870	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671871	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671873	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671874	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671878	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671879	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671880	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671881	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671885	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671886	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671889	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671892	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671895	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671896	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673803	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673805	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673811	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673812	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673813	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673817	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673821	0.89[AMR][1000 genomes]
rs72673822	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673823	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673832	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673834	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673853	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673855	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673858	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673860	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673865	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673870	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673872	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673873	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673888	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673889	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673890	0.80[AMR][1000 genomes]
rs72673891	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7676975	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097901	INTS12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106724200-106736400	Weak transcription	Ovary	ovary
4	chr4:106725600-106730000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:106727400-106730400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:106728000-106730600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:106728600-106730400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:106728800-106730000	Enhancers	HSMM	muscle
9	chr4:106728800-106730000	Enhancers	NHDF-Ad	bronchial
10	chr4:106729000-106730000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:106729200-106730400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:106729200-106730400	Active TSS	Aorta	Aorta
13	chr4:106729200-106730600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:106729400-106730000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:106729400-106730000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr4:106729400-106730000	Enhancers	Fetal Stomach	stomach
18	chr4:106729400-106730200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:106729400-106730200	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr4:106729400-106730400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr4:106729400-106730400	Active TSS	Psoas Muscle	Psoas
22	chr4:106729400-106730400	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr4:106729400-106730400	Active TSS	Stomach Smooth Muscle	stomach
24	chr4:106729400-106730400	Flanking Active TSS	HSMMtube	muscle
25	chr4:106729400-106730400	Flanking Active TSS	Osteobl	bone
26	chr4:106729400-106730600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:106729400-106730600	Flanking Active TSS	Fetal Lung	lung
28	chr4:106729600-106730000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr4:106729600-106730000	Active TSS	Rectal Smooth Muscle	rectum
30	chr4:106729600-106730000	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr4:106729600-106730200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:106729600-106730200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:106729600-106730200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:106729600-106730200	Active TSS	NHLF	lung
35	chr4:106729600-106730400	Active TSS	Colon Smooth Muscle	Colon
36	chr4:106729600-106730400	Enhancers	HMEC	breast

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