Variant report

Variant	rs59462153
Chromosome Location	chr4:106815088-106815089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10050159	0.86[EUR][1000 genomes]
rs10050333	0.86[EUR][1000 genomes]
rs10516525	0.83[EUR][1000 genomes]
rs10516526	0.83[EUR][1000 genomes]
rs10516527	0.87[EUR][1000 genomes]
rs10516528	0.87[EUR][1000 genomes]
rs10516529	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11097901	0.87[EUR][1000 genomes]
rs11722225	0.92[EUR][1000 genomes]
rs11723225	0.87[EUR][1000 genomes]
rs11723240	0.87[EUR][1000 genomes]
rs11723639	0.87[EUR][1000 genomes]
rs11724884	0.83[EUR][1000 genomes]
rs11726094	0.92[EUR][1000 genomes]
rs11726124	0.92[EUR][1000 genomes]
rs11726674	0.87[EUR][1000 genomes]
rs11727348	0.83[EUR][1000 genomes]
rs11727500	0.87[EUR][1000 genomes]
rs11727745	0.87[EUR][1000 genomes]
rs11728716	0.92[EUR][1000 genomes]
rs11728918	0.87[EUR][1000 genomes]
rs11730354	0.92[EUR][1000 genomes]
rs11730365	0.92[EUR][1000 genomes]
rs11730660	0.98[EUR][1000 genomes]
rs11731417	0.87[EUR][1000 genomes]
rs11731938	0.87[EUR][1000 genomes]
rs11732298	0.83[EUR][1000 genomes]
rs11732629	0.92[EUR][1000 genomes]
rs11732650	0.92[EUR][1000 genomes]
rs11733093	0.87[EUR][1000 genomes]
rs11733124	0.83[EUR][1000 genomes]
rs11733150	0.92[EUR][1000 genomes]
rs11733223	0.92[EUR][1000 genomes]
rs11733225	0.83[EUR][1000 genomes]
rs11733287	0.83[EUR][1000 genomes]
rs11733654	0.87[EUR][1000 genomes]
rs11734568	0.83[EUR][1000 genomes]
rs11734571	0.83[EUR][1000 genomes]
rs11735527	0.83[EUR][1000 genomes]
rs11735851	0.83[EUR][1000 genomes]
rs11736834	0.83[EUR][1000 genomes]
rs11736859	0.83[EUR][1000 genomes]
rs17036156	0.83[EUR][1000 genomes]
rs17036177	0.83[EUR][1000 genomes]
rs17036189	0.83[EUR][1000 genomes]
rs17036225	0.83[EUR][1000 genomes]
rs17036230	0.83[EUR][1000 genomes]
rs17036258	0.87[EUR][1000 genomes]
rs17036292	0.87[EUR][1000 genomes]
rs17036308	0.92[EUR][1000 genomes]
rs17036310	0.92[EUR][1000 genomes]
rs17036327	0.92[EUR][1000 genomes]
rs17036341	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17331332	0.98[EUR][1000 genomes]
rs28488297	0.86[EUR][1000 genomes]
rs35808787	0.83[EUR][1000 genomes]
rs58775257	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67277942	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72671866	0.83[EUR][1000 genomes]
rs72671869	0.83[EUR][1000 genomes]
rs72671870	0.83[EUR][1000 genomes]
rs72671871	0.83[EUR][1000 genomes]
rs72671873	0.83[EUR][1000 genomes]
rs72671874	0.83[EUR][1000 genomes]
rs72671878	0.83[EUR][1000 genomes]
rs72671879	0.83[EUR][1000 genomes]
rs72671880	0.83[EUR][1000 genomes]
rs72671881	0.83[EUR][1000 genomes]
rs72671885	0.83[EUR][1000 genomes]
rs72671886	0.83[EUR][1000 genomes]
rs72671889	0.83[EUR][1000 genomes]
rs72671892	0.83[EUR][1000 genomes]
rs72671895	0.83[EUR][1000 genomes]
rs72671896	0.83[EUR][1000 genomes]
rs72673803	0.83[EUR][1000 genomes]
rs72673805	0.83[EUR][1000 genomes]
rs72673811	0.83[EUR][1000 genomes]
rs72673812	0.83[EUR][1000 genomes]
rs72673813	0.83[EUR][1000 genomes]
rs72673817	0.83[EUR][1000 genomes]
rs72673822	0.87[EUR][1000 genomes]
rs72673823	0.87[EUR][1000 genomes]
rs72673824	0.87[EUR][1000 genomes]
rs72673828	0.87[EUR][1000 genomes]
rs72673831	0.87[EUR][1000 genomes]
rs72673832	0.87[EUR][1000 genomes]
rs72673834	0.87[EUR][1000 genomes]
rs72673853	0.92[EUR][1000 genomes]
rs72673855	0.92[EUR][1000 genomes]
rs72673858	0.92[EUR][1000 genomes]
rs72673860	0.92[EUR][1000 genomes]
rs72673865	0.92[EUR][1000 genomes]
rs72673870	0.92[EUR][1000 genomes]
rs72673872	0.92[EUR][1000 genomes]
rs72673873	0.92[EUR][1000 genomes]
rs72673888	0.98[EUR][1000 genomes]
rs72673889	0.98[EUR][1000 genomes]
rs72673891	0.98[EUR][1000 genomes]
rs7676975	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta
2	chr4:106814400-106815800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:106814600-106815600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:106815000-106815400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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