Variant report

Variant	rs72671870
Chromosome Location	chr4:106659345-106659346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10050159	0.86[EUR][1000 genomes]
rs10050333	0.86[EUR][1000 genomes]
rs10516525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516526	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516527	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516528	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516529	0.85[EUR][1000 genomes]
rs11097901	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11722225	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11723225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723639	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724839	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724884	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726094	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726124	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726569	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726674	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727189	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727348	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727745	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728044	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728716	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11728918	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729003	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11730354	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730365	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730660	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11731386	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731417	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731714	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731938	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732298	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732629	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732650	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733093	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11733124	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733150	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733223	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734568	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11734571	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11736834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11736859	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11737335	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11737741	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12374256	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036090	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036105	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036120	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036123	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036125	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036129	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036139	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036142	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036156	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036189	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036225	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036230	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036258	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036292	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036308	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036310	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036327	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036337	0.88[AMR][1000 genomes]
rs17036341	0.85[EUR][1000 genomes]
rs17331332	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28488297	0.86[EUR][1000 genomes]
rs34072732	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35370743	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35808787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4373160	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58775257	0.85[EUR][1000 genomes]
rs59462153	0.83[EUR][1000 genomes]
rs67277942	0.85[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72669998	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671805	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671808	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671809	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671810	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671811	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671815	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671820	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671824	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671826	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671828	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671835	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671836	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671837	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671840	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671844	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671849	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671852	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671853	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671854	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671856	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671861	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671869	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671871	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671874	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671878	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671879	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671880	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671881	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671885	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671886	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671892	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671895	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671896	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673803	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673805	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673812	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673817	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673821	0.92[AMR][1000 genomes]
rs72673822	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673823	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673824	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673828	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673831	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673832	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673834	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673853	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673855	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673858	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673860	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673865	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673870	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673872	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673873	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673888	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673889	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673890	0.84[AMR][1000 genomes]
rs72673891	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7676975	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106631000-106663000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:106631000-106669400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:106634000-106693200	Weak transcription	K562	blood
4	chr4:106635600-106665000	Weak transcription	HUVEC	blood vessel
5	chr4:106635600-106669800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:106637200-106660800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:106643000-106662600	Weak transcription	Fetal Kidney	kidney
8	chr4:106648000-106669800	Weak transcription	HSMM	muscle
9	chr4:106654400-106659600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:106654600-106660000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr4:106655600-106659400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr4:106655600-106659800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr4:106655800-106659400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr4:106656200-106659400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr4:106656400-106659400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:106656600-106659600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:106657000-106660200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:106657000-106660800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:106657000-106660800	Weak transcription	Thymus	Thymus
20	chr4:106657000-106661000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:106657000-106661000	Weak transcription	Fetal Intestine Small	intestine
22	chr4:106657000-106661000	Weak transcription	Fetal Thymus	thymus
23	chr4:106657000-106661000	Weak transcription	Pancreas	Pancrea
24	chr4:106657000-106661000	Weak transcription	Spleen	Spleen
25	chr4:106657000-106662400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:106657000-106663000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:106657000-106669800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:106657000-106669800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:106657000-106670000	Weak transcription	Gastric	stomach
30	chr4:106657000-106670200	Weak transcription	Ovary	ovary
31	chr4:106657600-106659400	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr4:106657600-106659600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:106658000-106659600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:106658000-106660200	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr4:106658400-106659400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:106658600-106659400	ZNF genes & repeats	Aorta	Aorta
37	chr4:106658600-106661400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:106658800-106659400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:106658800-106659400	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr4:106658800-106659400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:106658800-106659400	ZNF genes & repeats	Fetal Brain Male	brain
42	chr4:106658800-106659600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr4:106658800-106659600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:106658800-106659600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
45	chr4:106659000-106659400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr4:106659000-106659400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:106659000-106659400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:106659000-106659400	ZNF genes & repeats	Fetal Stomach	stomach
49	chr4:106659000-106659600	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr4:106659000-106659600	ZNF genes & repeats	Fetal Muscle Leg	muscle

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