Variant report

Variant	rs72673821
Chromosome Location	chr4:106718253-106718254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106716229..106719180-chr4:106725111..106727135,2	MCF-7	breast:

rs_ID	r²[population]
rs10516525	0.92[AMR][1000 genomes]
rs10516526	0.89[AMR][1000 genomes]
rs10516527	0.89[AMR][1000 genomes]
rs10516528	0.89[AMR][1000 genomes]
rs11097901	0.89[AMR][1000 genomes]
rs11722225	0.89[AMR][1000 genomes]
rs11723225	0.89[AMR][1000 genomes]
rs11723240	0.89[AMR][1000 genomes]
rs11723639	0.92[AMR][1000 genomes]
rs11724839	0.89[AMR][1000 genomes]
rs11724884	0.89[AMR][1000 genomes]
rs11726094	0.92[AMR][1000 genomes]
rs11726124	0.89[AMR][1000 genomes]
rs11726569	0.81[AMR][1000 genomes]
rs11726674	0.89[AMR][1000 genomes]
rs11727189	0.81[AMR][1000 genomes]
rs11727348	0.89[AMR][1000 genomes]
rs11727500	0.89[AMR][1000 genomes]
rs11727735	0.92[AMR][1000 genomes]
rs11727745	0.89[AMR][1000 genomes]
rs11728044	0.81[AMR][1000 genomes]
rs11728716	0.92[AMR][1000 genomes]
rs11728918	0.89[AMR][1000 genomes]
rs11729003	0.89[AMR][1000 genomes]
rs11730354	0.89[AMR][1000 genomes]
rs11730365	0.89[AMR][1000 genomes]
rs11730660	0.89[AMR][1000 genomes]
rs11731386	0.81[AMR][1000 genomes]
rs11731417	0.89[AMR][1000 genomes]
rs11731714	0.85[AMR][1000 genomes]
rs11731938	0.92[AMR][1000 genomes]
rs11732298	0.89[AMR][1000 genomes]
rs11732629	0.92[AMR][1000 genomes]
rs11732650	0.89[AMR][1000 genomes]
rs11733093	0.92[AMR][1000 genomes]
rs11733124	0.85[AMR][1000 genomes]
rs11733150	0.89[AMR][1000 genomes]
rs11733223	0.89[AMR][1000 genomes]
rs11733225	0.92[AMR][1000 genomes]
rs11733287	0.89[AMR][1000 genomes]
rs11733654	0.89[AMR][1000 genomes]
rs11734568	0.89[AMR][1000 genomes]
rs11734571	0.89[AMR][1000 genomes]
rs11735527	0.89[AMR][1000 genomes]
rs11735851	0.92[AMR][1000 genomes]
rs11736834	0.92[AMR][1000 genomes]
rs11736859	0.89[AMR][1000 genomes]
rs11737335	0.89[AMR][1000 genomes]
rs11737741	0.89[AMR][1000 genomes]
rs17036105	0.85[AMR][1000 genomes]
rs17036120	0.81[AMR][1000 genomes]
rs17036123	0.81[AMR][1000 genomes]
rs17036125	0.81[AMR][1000 genomes]
rs17036129	0.85[AMR][1000 genomes]
rs17036139	0.89[AMR][1000 genomes]
rs17036142	0.89[AMR][1000 genomes]
rs17036156	0.89[AMR][1000 genomes]
rs17036177	0.92[AMR][1000 genomes]
rs17036189	0.89[AMR][1000 genomes]
rs17036225	0.89[AMR][1000 genomes]
rs17036230	0.89[AMR][1000 genomes]
rs17036258	0.92[AMR][1000 genomes]
rs17036292	0.92[AMR][1000 genomes]
rs17036308	0.89[AMR][1000 genomes]
rs17036310	0.89[AMR][1000 genomes]
rs17036327	0.92[AMR][1000 genomes]
rs17036337	0.81[AMR][1000 genomes]
rs17331332	0.89[AMR][1000 genomes]
rs34072732	0.81[AMR][1000 genomes]
rs35370743	0.85[AMR][1000 genomes]
rs35808787	0.89[AMR][1000 genomes]
rs4373160	0.89[AMR][1000 genomes]
rs72671805	0.81[AMR][1000 genomes]
rs72671808	0.81[AMR][1000 genomes]
rs72671809	0.81[AMR][1000 genomes]
rs72671810	0.85[AMR][1000 genomes]
rs72671811	0.81[AMR][1000 genomes]
rs72671815	0.81[AMR][1000 genomes]
rs72671820	0.85[AMR][1000 genomes]
rs72671824	0.81[AMR][1000 genomes]
rs72671826	0.85[AMR][1000 genomes]
rs72671828	0.81[AMR][1000 genomes]
rs72671835	0.89[AMR][1000 genomes]
rs72671836	0.89[AMR][1000 genomes]
rs72671837	0.89[AMR][1000 genomes]
rs72671840	0.89[AMR][1000 genomes]
rs72671844	0.89[AMR][1000 genomes]
rs72671849	0.89[AMR][1000 genomes]
rs72671852	0.92[AMR][1000 genomes]
rs72671853	0.89[AMR][1000 genomes]
rs72671854	0.89[AMR][1000 genomes]
rs72671855	0.92[AMR][1000 genomes]
rs72671856	0.89[AMR][1000 genomes]
rs72671858	0.92[AMR][1000 genomes]
rs72671861	0.89[AMR][1000 genomes]
rs72671862	0.92[AMR][1000 genomes]
rs72671863	0.92[AMR][1000 genomes]
rs72671866	0.92[AMR][1000 genomes]
rs72671869	0.89[AMR][1000 genomes]
rs72671870	0.92[AMR][1000 genomes]
rs72671871	0.89[AMR][1000 genomes]
rs72671873	0.92[AMR][1000 genomes]
rs72671874	0.89[AMR][1000 genomes]
rs72671878	0.89[AMR][1000 genomes]
rs72671879	0.89[AMR][1000 genomes]
rs72671880	0.85[AMR][1000 genomes]
rs72671881	0.89[AMR][1000 genomes]
rs72671885	0.89[AMR][1000 genomes]
rs72671886	0.89[AMR][1000 genomes]
rs72671889	0.92[AMR][1000 genomes]
rs72671892	0.89[AMR][1000 genomes]
rs72671895	0.89[AMR][1000 genomes]
rs72671896	0.89[AMR][1000 genomes]
rs72673803	0.89[AMR][1000 genomes]
rs72673805	0.89[AMR][1000 genomes]
rs72673811	0.89[AMR][1000 genomes]
rs72673812	0.89[AMR][1000 genomes]
rs72673813	0.92[AMR][1000 genomes]
rs72673817	0.89[AMR][1000 genomes]
rs72673822	0.92[AMR][1000 genomes]
rs72673823	0.92[AMR][1000 genomes]
rs72673824	0.89[AMR][1000 genomes]
rs72673828	0.89[AMR][1000 genomes]
rs72673831	0.89[AMR][1000 genomes]
rs72673832	0.92[AMR][1000 genomes]
rs72673834	0.92[AMR][1000 genomes]
rs72673853	0.89[AMR][1000 genomes]
rs72673855	0.89[AMR][1000 genomes]
rs72673858	0.89[AMR][1000 genomes]
rs72673860	0.92[AMR][1000 genomes]
rs72673865	0.89[AMR][1000 genomes]
rs72673870	0.89[AMR][1000 genomes]
rs72673872	0.89[AMR][1000 genomes]
rs72673873	0.89[AMR][1000 genomes]
rs72673888	0.89[AMR][1000 genomes]
rs72673889	0.89[AMR][1000 genomes]
rs72673891	0.89[AMR][1000 genomes]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
3	chr4:106697200-106725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:106697800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:106698000-106725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:106698200-106719200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:106714200-106725800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:106717400-106719000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:106717800-106729000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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