Variant report

Variant	rs72671844
Chromosome Location	chr4:106642108-106642109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106639734..106642642-chr4:106644005..106646178,2	MCF-7	breast:

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10050159	0.83[EUR][1000 genomes]
rs10050333	0.83[EUR][1000 genomes]
rs10516525	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516527	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516528	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516529	0.81[EUR][1000 genomes]
rs11097901	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11722225	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11723225	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11723240	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11723639	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11724839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11724884	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726094	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11726124	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11726569	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726674	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727189	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727348	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727735	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727745	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11728044	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728716	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11728918	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11729003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730354	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730365	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730660	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11731386	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11731417	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731714	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731938	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732298	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732629	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11732650	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11733093	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11733124	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733150	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11733223	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11733225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733287	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733654	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11734568	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734571	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11735527	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11735851	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11736834	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11736859	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11737335	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11737741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12374256	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17036066	0.81[EUR][1000 genomes]
rs17036090	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036105	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036120	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036123	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036125	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036129	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036156	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036177	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036189	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036225	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036230	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036258	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036292	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036308	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036310	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036327	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036337	0.84[AMR][1000 genomes]
rs17036341	0.81[EUR][1000 genomes]
rs17331332	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28488297	0.83[EUR][1000 genomes]
rs34072732	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35370743	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35808787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4373160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58775257	0.81[EUR][1000 genomes]
rs67277942	0.81[EUR][1000 genomes]
rs72669992	0.83[EUR][1000 genomes]
rs72669993	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669995	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669997	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72669998	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72670002	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671805	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671808	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671809	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671810	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671811	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671815	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671820	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671824	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671826	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671828	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671852	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72671854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671861	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671862	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671863	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671866	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671870	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671873	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671878	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671879	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671880	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671881	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671885	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671889	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671895	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671896	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673803	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673811	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673812	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673813	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673817	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673821	0.89[AMR][1000 genomes]
rs72673822	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673823	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673824	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673828	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673832	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673834	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673853	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673855	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673858	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673860	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673865	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673870	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673872	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673873	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72673888	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72673889	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72673890	0.80[AMR][1000 genomes]
rs72673891	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7676975	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106630600-106642800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106630600-106650600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:106630600-106656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:106630600-106656200	Weak transcription	Esophagus	oesophagus
5	chr4:106630800-106648000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:106630800-106649200	Weak transcription	Small Intestine	intestine
7	chr4:106630800-106656000	Weak transcription	Ovary	ovary
8	chr4:106630800-106656200	Weak transcription	Left Ventricle	heart
9	chr4:106630800-106656200	Weak transcription	Thymus	Thymus
10	chr4:106630800-106658400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:106631000-106643000	Weak transcription	Colonic Mucosa	Colon
12	chr4:106631000-106648800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:106631000-106648800	Weak transcription	Brain Germinal Matrix	brain
14	chr4:106631000-106650600	Weak transcription	Fetal Brain Female	brain
15	chr4:106631000-106654600	Weak transcription	Fetal Intestine Large	intestine
16	chr4:106631000-106656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:106631000-106656200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:106631000-106658200	Weak transcription	Right Ventricle	heart
19	chr4:106631000-106659000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:106631000-106663000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:106631000-106669400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:106631200-106651800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:106631400-106656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:106631400-106658800	Weak transcription	A549	lung
25	chr4:106631600-106645400	Weak transcription	Fetal Brain Male	brain
26	chr4:106632000-106646400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:106632000-106648800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:106632200-106642800	Weak transcription	Hela-S3	cervix
29	chr4:106634000-106655800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:106634000-106655800	Weak transcription	Liver	Liver
31	chr4:106634000-106693200	Weak transcription	K562	blood
32	chr4:106634600-106656200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:106635600-106647400	Weak transcription	NH-A	brain
34	chr4:106635600-106651200	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:106635600-106651600	Weak transcription	NHLF	lung
36	chr4:106635600-106655600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:106635600-106656200	Weak transcription	Aorta	Aorta
38	chr4:106635600-106656200	Weak transcription	Brain Anterior Caudate	brain
39	chr4:106635600-106656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:106635600-106658400	Weak transcription	Osteobl	bone
41	chr4:106635600-106665000	Weak transcription	HUVEC	blood vessel
42	chr4:106635600-106669800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:106636200-106658800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:106636400-106642400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:106636400-106647000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:106636400-106647200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:106636400-106650000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:106636400-106650600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:106636400-106651600	Weak transcription	HMEC	breast
50	chr4:106636400-106651600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links