Variant report

Variant	rs72673873
Chromosome Location	chr4:106780301-106780302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106779895..106782052-chr4:106793000..106795244,2	MCF-7	breast:
2	chr4:106780017..106783245-chr4:106815996..106818105,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10050159	0.94[EUR][1000 genomes]
rs10050333	0.94[EUR][1000 genomes]
rs10516525	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516529	0.94[EUR][1000 genomes]
rs11097901	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11722225	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11723225	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723639	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724839	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11724884	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726094	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726124	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726569	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11726674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727189	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727500	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727735	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727745	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728044	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11728716	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729003	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730660	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11731386	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731714	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731938	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732298	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732629	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733093	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733124	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733225	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733654	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734568	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11734571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735851	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736834	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11737335	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11737741	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12374256	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036090	0.84[AMR][1000 genomes]
rs17036105	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036120	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036123	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036125	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036129	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036139	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036142	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036156	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036177	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036189	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036225	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036258	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036292	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036308	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036310	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036327	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036337	0.84[AMR][1000 genomes]
rs17036341	0.94[EUR][1000 genomes]
rs17331332	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28488297	0.94[EUR][1000 genomes]
rs34072732	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35370743	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35808787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4373160	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58775257	0.94[EUR][1000 genomes]
rs59462153	0.92[EUR][1000 genomes]
rs67277942	0.94[EUR][1000 genomes]
rs72669993	0.80[AMR][1000 genomes]
rs72669995	0.80[AMR][1000 genomes]
rs72669997	0.80[AMR][1000 genomes]
rs72669998	0.84[AMR][1000 genomes]
rs72670002	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72671805	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671808	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671809	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671810	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671811	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671815	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671820	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671824	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671826	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671828	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671835	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671836	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671837	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671840	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671844	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671849	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671852	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671853	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72671854	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671855	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671856	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671858	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671861	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671862	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671863	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671866	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671870	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671871	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671873	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671880	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671885	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671889	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673805	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673811	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673813	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673821	0.89[AMR][1000 genomes]
rs72673822	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673823	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673828	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673832	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673834	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673853	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673860	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673865	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673888	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673889	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673890	0.80[AMR][1000 genomes]
rs72673891	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7676975	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106758600-106781200	Weak transcription	Pancreas	Pancrea
2	chr4:106765400-106780600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:106779600-106783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:106779800-106780600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:106780000-106781000	Enhancers	GM12878-XiMat	blood
6	chr4:106780000-106781200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:106780200-106780400	Weak transcription	NHEK	skin
8	chr4:106780200-106780800	Enhancers	HSMM	muscle
9	chr4:106780200-106781000	Enhancers	HSMMtube	muscle
10	chr4:106780200-106781200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:106780200-106781200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:106780200-106781200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:106780200-106781200	Enhancers	A549	lung

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