Variant report

Variant	rs11726094
Chromosome Location	chr4:106773387-106773388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106771946..106774406-chr4:106815601..106817256,2	MCF-7	breast:
2	chr4:106637277..106639218-chr4:106771875..106773400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction
ENSG00000138780	Chromatin interaction
ENSG00000138785	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10050159	0.94[EUR][1000 genomes]
rs10050333	0.94[EUR][1000 genomes]
rs10516525	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516526	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516527	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516528	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516529	0.94[EUR][1000 genomes]
rs11097901	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11722225	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11723225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723639	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724839	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11724884	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726124	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726569	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11726674	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727189	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727348	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727735	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727745	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728044	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11728716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11728918	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729003	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730354	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730365	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730660	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11731386	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731417	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731714	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731938	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732298	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732650	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733093	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733124	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733150	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733223	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733225	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733287	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734568	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11734571	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735527	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735851	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736834	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736859	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11737335	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11737741	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12374256	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036090	0.80[AMR][1000 genomes]
rs17036105	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036120	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036123	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036125	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036129	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036139	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036142	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036156	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036177	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036189	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036225	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036230	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036258	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036292	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036310	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036337	0.88[AMR][1000 genomes]
rs17036341	0.94[EUR][1000 genomes]
rs17331332	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28488297	0.94[EUR][1000 genomes]
rs34072732	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35370743	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35808787	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4373160	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58775257	0.94[EUR][1000 genomes]
rs59462153	0.92[EUR][1000 genomes]
rs67277942	0.94[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes]
rs72669998	0.80[AMR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72671805	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671808	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671809	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671810	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671811	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671815	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671820	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671824	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671826	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671828	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671835	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671836	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671837	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671840	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671844	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671849	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671852	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671853	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72671854	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671855	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671856	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671858	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671861	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671862	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671863	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671866	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671869	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671870	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671871	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671873	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671874	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671878	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671879	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671880	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671881	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671885	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671886	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671889	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671892	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671895	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671896	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673803	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673805	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673811	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673812	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673813	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673817	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673821	0.92[AMR][1000 genomes]
rs72673822	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673823	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673824	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673828	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673831	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673832	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673834	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673853	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673870	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673872	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673873	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673888	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673889	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673890	0.84[AMR][1000 genomes]
rs72673891	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7676975	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11726094	INTS12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106746400-106776400	Weak transcription	Gastric	stomach
2	chr4:106755600-106779800	Weak transcription	Esophagus	oesophagus
3	chr4:106757200-106779200	Weak transcription	GM12878-XiMat	blood
4	chr4:106758000-106779000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:106758600-106781200	Weak transcription	Pancreas	Pancrea
6	chr4:106763600-106779800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:106765400-106779200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:106765400-106780600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:106765600-106779200	Weak transcription	NHEK	skin
10	chr4:106767000-106774000	Weak transcription	HSMM	muscle
11	chr4:106767000-106778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:106767000-106779800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links