Variant report

Variant	rs72670002
Chromosome Location	chr4:106594516-106594517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:106594458-106594517	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ARHGEF38	TF binding region

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10516525	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10516526	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10516527	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10516528	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11097901	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11722225	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11723225	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11723240	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11723639	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11724839	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11724884	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11726094	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11726124	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11726569	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726674	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11727189	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11727348	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11727500	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11727735	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11727745	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11728044	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11728716	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11728918	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11729003	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11730354	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11730365	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11730660	0.80[AMR][1000 genomes]
rs11731386	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11731417	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11731714	0.86[EUR][1000 genomes]
rs11731938	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11732298	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11732629	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11732650	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11733093	0.84[AMR][1000 genomes]
rs11733124	0.90[EUR][1000 genomes]
rs11733150	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11733223	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11733225	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11733287	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11733654	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11734568	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11734571	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11735213	0.84[AMR][1000 genomes]
rs11735527	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11735851	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11736834	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11736859	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11737335	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11737741	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12374256	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1374531	0.84[AMR][1000 genomes]
rs17035960	0.91[AMR][1000 genomes]
rs17035971	0.91[AMR][1000 genomes]
rs17036027	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17036052	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036066	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17036076	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17036090	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036105	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036120	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036123	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036125	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036129	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036139	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036142	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036156	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036177	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036189	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036225	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036230	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17036258	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17036292	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17036308	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17036310	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17036327	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17331332	0.80[AMR][1000 genomes]
rs34072732	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35370743	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35808787	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4373160	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669974	0.91[AMR][1000 genomes]
rs72669978	0.91[AMR][1000 genomes]
rs72669980	0.91[AMR][1000 genomes]
rs72669981	0.91[AMR][1000 genomes]
rs72669982	0.84[AMR][1000 genomes]
rs72669992	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72669993	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72669995	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72669997	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669998	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671805	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671808	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671809	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671810	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671811	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671815	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671820	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671824	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671826	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671828	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671835	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671836	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671837	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671840	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671844	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671849	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671852	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671853	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671854	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671855	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671856	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671858	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671861	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671862	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671863	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671866	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671869	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671870	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671871	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671873	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671874	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671878	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671879	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671880	0.90[EUR][1000 genomes]
rs72671881	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671885	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671886	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671889	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671892	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671895	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671896	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673803	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673805	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673811	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673812	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673813	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673817	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72673822	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673823	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673824	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673828	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673831	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673832	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673834	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673853	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673855	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673858	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673860	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673865	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673870	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673872	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673873	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72673888	0.80[AMR][1000 genomes]
rs72673889	0.80[AMR][1000 genomes]
rs72673891	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:106569800-106600400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106578600-106607000	Weak transcription	Small Intestine	intestine
4	chr4:106580400-106603400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106580400-106613200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106587800-106629000	Weak transcription	Lung	lung
7	chr4:106588800-106600200	Weak transcription	Pancreas	Pancrea
8	chr4:106589200-106598800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:106592600-106598600	Weak transcription	Fetal Intestine Large	intestine
10	chr4:106593000-106603800	Weak transcription	Aorta	Aorta
11	chr4:106594000-106603400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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