Variant report

Variant	rs17036052
Chromosome Location	chr4:106563379-106563380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106557959..106560192-chr4:106563157..106566031,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11725523	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11726569	0.80[AMR][1000 genomes]
rs11727189	0.80[AMR][1000 genomes]
rs11728044	0.80[AMR][1000 genomes]
rs11731386	0.80[AMR][1000 genomes]
rs11735213	0.92[AMR][1000 genomes]
rs1374531	0.92[AMR][1000 genomes]
rs17035917	0.82[AMR][1000 genomes]
rs17035960	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17035971	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036027	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036066	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036076	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036090	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17036105	0.84[AMR][1000 genomes]
rs17036120	0.80[AMR][1000 genomes]
rs17036123	0.80[AMR][1000 genomes]
rs17036125	0.80[AMR][1000 genomes]
rs17036129	0.84[AMR][1000 genomes]
rs34072732	0.80[AMR][1000 genomes]
rs35370743	0.84[AMR][1000 genomes]
rs72669972	0.82[AMR][1000 genomes]
rs72669974	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669978	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669980	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669981	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669982	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669986	0.84[EUR][1000 genomes]
rs72669992	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72669993	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72669995	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72669997	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72669998	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72670002	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72671805	0.80[AMR][1000 genomes]
rs72671808	0.80[AMR][1000 genomes]
rs72671809	0.80[AMR][1000 genomes]
rs72671810	0.84[AMR][1000 genomes]
rs72671811	0.80[AMR][1000 genomes]
rs72671815	0.80[AMR][1000 genomes]
rs72671820	0.84[AMR][1000 genomes]
rs72671824	0.80[AMR][1000 genomes]
rs72671826	0.84[AMR][1000 genomes]
rs72671828	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106564200	Weak transcription	Small Intestine	intestine
4	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:106559800-106565200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:106560000-106565600	Weak transcription	Fetal Lung	lung
10	chr4:106563000-106563400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:106563200-106563400	Flanking Active TSS	Right Atrium	heart

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