Variant report

Variant	rs72669986
Chromosome Location	chr4:106550272-106550273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11725523	0.84[EUR][1000 genomes]
rs17035960	0.90[EUR][1000 genomes]
rs17035971	0.90[EUR][1000 genomes]
rs17036025	0.97[AFR][1000 genomes]
rs17036027	0.88[EUR][1000 genomes]
rs17036052	0.84[EUR][1000 genomes]
rs17036066	0.86[EUR][1000 genomes]
rs17036076	0.84[EUR][1000 genomes]
rs17259503	0.87[AFR][1000 genomes]
rs17259931	0.85[AFR][1000 genomes]
rs17260120	0.87[AFR][1000 genomes]
rs17260183	0.85[AFR][1000 genomes]
rs17325276	0.87[AFR][1000 genomes]
rs4324547	0.85[AFR][1000 genomes]
rs4407508	0.87[AFR][1000 genomes]
rs4588463	0.87[AFR][1000 genomes]
rs72669974	0.86[EUR][1000 genomes]
rs72669978	0.86[EUR][1000 genomes]
rs72669980	0.86[EUR][1000 genomes]
rs72669981	0.86[EUR][1000 genomes]
rs72669982	0.83[EUR][1000 genomes]
rs72669984	0.87[AFR][1000 genomes]
rs72669992	0.84[EUR][1000 genomes]
rs72669993	0.83[EUR][1000 genomes]
rs72669995	0.83[EUR][1000 genomes]
rs7681991	0.87[AFR][1000 genomes]
rs7687176	0.87[AFR][1000 genomes]
rs961473	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:106540600-106553800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106542600-106551800	Weak transcription	HMEC	breast
6	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
7	chr4:106545800-106552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
9	chr4:106546000-106552400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:106546000-106553800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:106546000-106555800	Weak transcription	Fetal Lung	lung
12	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
13	chr4:106546200-106551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:106546200-106552000	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:106546200-106554000	Weak transcription	Small Intestine	intestine
16	chr4:106546800-106550600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:106546800-106551800	Weak transcription	Fetal Heart	heart
18	chr4:106547000-106553800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:106549400-106555200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:106549600-106555600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:106549600-106558600	Weak transcription	Gastric	stomach
22	chr4:106549800-106553400	Weak transcription	Stomach Mucosa	stomach
23	chr4:106550000-106551600	Weak transcription	Fetal Brain Male	brain
24	chr4:106550200-106551600	Weak transcription	Rectal Smooth Muscle	rectum

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