Variant report

Variant	rs961473
Chromosome Location	chr4:106535402-106535403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106507027..106509157-chr4:106533544..106535795,2	MCF-7	breast:
2	chr4:106492214..106494083-chr4:106533878..106536037,2	MCF-7	breast:
3	chr4:106533642..106537061-chr4:106540249..106545548,5	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10017111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10023798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10032269	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516520	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10516524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11097896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11721732	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11721842	0.90[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730080	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730082	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730825	0.90[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735330	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1294671	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1447097	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035915	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035936	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035951	0.90[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036025	0.84[AFR][1000 genomes]
rs17259503	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17259931	1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17260120	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17260183	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17260856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17261094	0.88[ASN][1000 genomes]
rs17261786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17262443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17262457	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17263714	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17325276	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17326919	0.88[ASN][1000 genomes]
rs17327234	0.88[ASN][1000 genomes]
rs1862081	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2098571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2112047	1.00[CHB][hapmap]
rs2112049	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2193857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2305212	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544401	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2544402	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544403	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553451	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553463	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553464	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553470	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2553471	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28402213	0.81[EUR][1000 genomes]
rs28536076	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3796920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3796923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4324546	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4324547	1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4326019	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4407508	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4588463	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs58412572	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59936741	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6833345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72669979	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72669984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72669986	0.87[AFR][1000 genomes]
rs73837046	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7666969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7676226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7681991	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7687176	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7698817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs961472	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
5	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea
6	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
7	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
8	chr4:106527400-106542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:106534600-106539800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:106534800-106537800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:106535000-106540400	Weak transcription	Fetal Lung	lung

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