Variant report

Variant	rs28536076
Chromosome Location	chr4:106527896-106527897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106524514..106526523-chr4:106526666..106529139,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10023798	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10032269	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516519	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10516520	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11721732	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11721842	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730080	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730082	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730825	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735330	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374530	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1447097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035915	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035936	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035939	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035951	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17259503	0.94[ASN][1000 genomes]
rs17259931	0.94[ASN][1000 genomes]
rs17260120	0.94[ASN][1000 genomes]
rs17260183	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17325276	0.94[ASN][1000 genomes]
rs2305212	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3796920	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4324546	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4324547	0.94[ASN][1000 genomes]
rs4326019	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4407508	0.94[ASN][1000 genomes]
rs4588463	0.94[ASN][1000 genomes]
rs58412572	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59428412	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59936741	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6833345	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72669979	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72669984	0.82[ASN][1000 genomes]
rs73837046	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7666969	0.94[ASN][1000 genomes]
rs7681991	0.94[ASN][1000 genomes]
rs7687176	0.94[ASN][1000 genomes]
rs7698817	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs961472	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs961473	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
5	chr4:106523800-106528800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea
7	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:106527200-106534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
10	chr4:106527400-106531400	Weak transcription	Stomach Mucosa	stomach
11	chr4:106527400-106542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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