Variant report

Variant	rs17325276
Chromosome Location	chr4:106519663-106519664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10017111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10023798	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10032269	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516520	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516521	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10516524	1.00[JPT][hapmap]
rs11097896	1.00[JPT][hapmap]
rs11721732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11721842	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11730080	1.00[ASN][1000 genomes]
rs11730082	1.00[ASN][1000 genomes]
rs11730825	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11735330	1.00[ASN][1000 genomes]
rs1294671	1.00[JPT][hapmap]
rs1447097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17035915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17035936	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17035939	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17035951	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17036025	0.84[AFR][1000 genomes]
rs17259503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17259931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17260856	1.00[JPT][hapmap]
rs17261094	0.82[ASN][1000 genomes]
rs17261786	1.00[JPT][hapmap]
rs17262443	1.00[JPT][hapmap]
rs17262457	1.00[JPT][hapmap]
rs17263714	1.00[JPT][hapmap]
rs17326919	0.82[ASN][1000 genomes]
rs17327234	0.82[ASN][1000 genomes]
rs1862081	1.00[JPT][hapmap]
rs2098571	1.00[JPT][hapmap]
rs2112049	1.00[JPT][hapmap]
rs2305212	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2544401	1.00[JPT][hapmap]
rs2544402	1.00[JPT][hapmap]
rs2544403	1.00[JPT][hapmap]
rs2544424	1.00[JPT][hapmap]
rs2544426	1.00[JPT][hapmap]
rs2544429	1.00[JPT][hapmap]
rs2553446	1.00[JPT][hapmap]
rs2553448	1.00[JPT][hapmap]
rs2553451	1.00[JPT][hapmap]
rs2553464	1.00[JPT][hapmap]
rs2553470	1.00[JPT][hapmap]
rs2553471	1.00[JPT][hapmap]
rs28536076	0.94[ASN][1000 genomes]
rs3796920	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3796923	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4324546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4324547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4407508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58412572	1.00[ASN][1000 genomes]
rs59936741	1.00[ASN][1000 genomes]
rs6833345	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs72669979	1.00[ASN][1000 genomes]
rs72669984	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72669986	0.87[AFR][1000 genomes]
rs73837046	1.00[ASN][1000 genomes]
rs7666969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676226	1.00[JPT][hapmap]
rs7681991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs961472	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs961473	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106515600-106521000	Weak transcription	Fetal Heart	heart
3	chr4:106516000-106519800	Weak transcription	A549	lung
4	chr4:106516000-106521200	Weak transcription	Fetal Kidney	kidney
5	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:106516200-106520000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:106518000-106521600	Weak transcription	Right Atrium	heart
9	chr4:106518200-106524400	Weak transcription	Lung	lung
10	chr4:106518200-106524400	Weak transcription	Pancreas	Pancrea
11	chr4:106518800-106520800	Enhancers	Fetal Intestine Large	intestine
12	chr4:106518800-106521400	Enhancers	Fetal Intestine Small	intestine
13	chr4:106518800-106521800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:106519200-106521200	Enhancers	Stomach Mucosa	stomach
15	chr4:106519400-106520200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:106519400-106520200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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