Variant report

Variant	rs17036025
Chromosome Location	chr4:106554429-106554430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106554040..106554637-chr4:106603968..106604587,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17259503	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17259931	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17260120	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17260183	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17325276	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4324547	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4407508	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4588463	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs72669984	0.84[AFR][1000 genomes]
rs72669986	0.97[AFR][1000 genomes]
rs7681991	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs7687176	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs961473	0.83[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
4	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
5	chr4:106546000-106555800	Weak transcription	Fetal Lung	lung
6	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:106549400-106555200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:106549600-106555600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:106549600-106558600	Weak transcription	Gastric	stomach
10	chr4:106550600-106559400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:106551600-106555200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:106551800-106554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:106551800-106555400	Enhancers	HMEC	breast
14	chr4:106552400-106555200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:106552400-106555600	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:106552400-106555600	Enhancers	GM12878-XiMat	blood
17	chr4:106552400-106558400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:106552600-106555000	Weak transcription	Fetal Brain Male	brain
19	chr4:106552800-106555600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:106552800-106558200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:106552800-106558400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:106552800-106558400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:106553200-106559000	Weak transcription	Fetal Kidney	kidney
24	chr4:106553400-106554800	Enhancers	Stomach Mucosa	stomach
25	chr4:106553400-106555400	Enhancers	NHEK	skin
26	chr4:106553600-106558800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:106553800-106555800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr4:106553800-106556000	Enhancers	Duodenum Mucosa	Duodenum
29	chr4:106553800-106556400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr4:106554000-106554600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:106554000-106555000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:106554000-106555400	Enhancers	Small Intestine	intestine
33	chr4:106554000-106558600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:106554200-106555800	Enhancers	Fetal Heart	heart
35	chr4:106554400-106556000	Enhancers	Colon Smooth Muscle	Colon

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