Variant report

Variant	rs17036076
Chromosome Location	chr4:106575269-106575270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106571145..106573757-chr4:106574774..106576715,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10050159	1.00[CEU][hapmap]
rs10050333	1.00[CEU][hapmap]
rs10516525	1.00[CEU][hapmap]
rs10516526	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10516527	1.00[CEU][hapmap]
rs10516528	1.00[CEU][hapmap]
rs11097901	1.00[CEU][hapmap]
rs11722225	1.00[CEU][hapmap]
rs11723225	1.00[CEU][hapmap]
rs11724839	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11725523	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11726124	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs11726569	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs11726674	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727189	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11727348	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727735	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727745	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11728044	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11728716	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs11731386	0.81[AMR][1000 genomes]
rs11731417	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11732298	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11732650	1.00[CEU][hapmap]
rs11733223	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs11733225	1.00[CEU][hapmap]
rs11733287	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11735213	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs11735851	1.00[CEU][hapmap]
rs11736859	1.00[CEU][hapmap]
rs12374256	1.00[CEU][hapmap]
rs1374531	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs17035917	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs17035960	0.88[CEU][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17035971	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036027	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036052	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036066	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17036090	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036120	0.81[AMR][1000 genomes]
rs17036123	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs17036125	0.81[AMR][1000 genomes]
rs17036129	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036139	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036142	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036156	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036225	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs17036230	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036337	1.00[MEX][hapmap]
rs199332	0.86[TSI][hapmap]
rs34072732	0.81[AMR][1000 genomes]
rs6858710	1.00[ASW][hapmap]
rs72669961	0.83[EUR][1000 genomes]
rs72669971	0.85[EUR][1000 genomes]
rs72669974	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669978	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669980	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669981	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669982	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669986	0.84[EUR][1000 genomes]
rs72669992	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72669998	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72671805	0.81[AMR][1000 genomes]
rs72671808	0.81[AMR][1000 genomes]
rs72671809	0.81[AMR][1000 genomes]
rs72671811	0.81[AMR][1000 genomes]
rs72671815	0.81[AMR][1000 genomes]
rs72671824	0.81[AMR][1000 genomes]
rs72671828	0.81[AMR][1000 genomes]
rs7676975	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17036076	FABP4	trans	brain	seeQTL
rs17036076	INTS12	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:106569800-106600400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:106574400-106585400	Weak transcription	Rectal Smooth Muscle	rectum

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