Variant report

Variant	rs11728716
Chromosome Location	chr4:106755996-106755997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106726178..106728483-chr4:106755160..106757893,2	K562	blood:

Extended variants
information (count: 155 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10050159	1.00[CEU][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs10050333	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10516525	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516526	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516527	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516528	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516529	0.87[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11097901	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11722225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11723225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724839	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11724884	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726124	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726569	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11726674	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727189	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727348	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727735	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11727745	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728044	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11728918	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729003	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730354	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730365	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730660	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11731386	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731417	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731714	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732298	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732650	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733124	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733150	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733223	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733225	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733287	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734568	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11734571	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735527	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735851	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11736859	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11737335	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11737741	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12374256	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036090	0.80[AMR][1000 genomes]
rs17036105	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036120	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036123	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036125	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036129	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036139	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036142	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036156	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036189	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036225	1.00[CEU][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036230	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036310	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036337	1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs17036341	0.94[EUR][1000 genomes]
rs17331332	0.87[CEU][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28488297	0.94[EUR][1000 genomes]
rs34072732	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35370743	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35808787	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35856766	1.00[AFR][1000 genomes]
rs4373160	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58775257	0.94[EUR][1000 genomes]
rs59462153	0.92[EUR][1000 genomes]
rs67277942	0.94[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes]
rs72669998	0.80[AMR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72671805	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671808	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671809	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671810	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671811	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671815	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671820	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671824	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671826	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671828	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671835	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671836	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671837	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671840	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671844	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671849	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671852	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671853	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72671854	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671855	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671856	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671858	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671861	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671862	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671863	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72671866	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671869	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671870	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671871	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671874	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671878	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671879	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671880	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671881	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671885	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671886	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671892	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671895	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72671896	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673803	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673805	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673811	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673812	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673817	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673821	0.92[AMR][1000 genomes]
rs72673822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673824	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673828	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673831	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673853	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673870	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673872	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673873	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673888	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673889	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72673890	0.84[AMR][1000 genomes]
rs72673891	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7676975	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11728716	LOC57117	cis	multi-tissue	Pritchard
rs11728716	INTS12	cis	brain	seeQTL
rs11728716	INTS12	cis	lymphoblastoid	seeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
5	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
6	chr4:106730800-106761800	Weak transcription	HSMM	muscle
7	chr4:106734400-106756400	Weak transcription	Fetal Thymus	thymus
8	chr4:106737000-106768600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:106738800-106757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:106741600-106756400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:106742000-106761200	Weak transcription	HSMMtube	muscle
12	chr4:106742000-106763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:106742000-106766200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:106742200-106757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:106742400-106766600	Weak transcription	Aorta	Aorta
16	chr4:106742600-106756200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:106743200-106756200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:106743400-106757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:106743600-106768600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr4:106744000-106768600	Weak transcription	Adipose Nuclei	Adipose
21	chr4:106744200-106764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:106744800-106756600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:106745000-106763800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:106745200-106759400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:106745400-106757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:106745600-106756400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:106745800-106769000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:106746000-106756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:106746000-106772200	Weak transcription	Left Ventricle	heart
30	chr4:106746200-106756200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:106746400-106776400	Weak transcription	Gastric	stomach
32	chr4:106747000-106768200	Weak transcription	K562	blood
33	chr4:106747000-106771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:106747400-106757200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:106747400-106767000	Weak transcription	A549	lung
36	chr4:106747400-106772000	Weak transcription	Fetal Intestine Large	intestine
37	chr4:106748200-106763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:106748600-106756400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:106748600-106756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:106748600-106756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:106748600-106756400	Weak transcription	Thymus	Thymus
42	chr4:106749400-106756200	Weak transcription	Primary T cells from cord blood	blood
43	chr4:106751200-106766200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr4:106751800-106767800	Weak transcription	NH-A	brain
45	chr4:106752600-106762200	Weak transcription	Fetal Muscle Leg	muscle
46	chr4:106752600-106764200	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:106752600-106766600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr4:106753800-106772000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr4:106754000-106756200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:106754000-106757800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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