Variant report

Variant	rs10050159
Chromosome Location	chr4:106765915-106765916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106757830..106760223-chr4:106765801..106769766,3	MCF-7	breast:

Extended variants
information (count: 147 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10026373	0.91[ASW][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs10050333	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516525	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10516526	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs10516527	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10516528	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10516529	0.87[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11097901	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11722225	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11723225	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11723240	0.90[EUR][1000 genomes]
rs11723639	0.90[EUR][1000 genomes]
rs11724839	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11724884	0.86[EUR][1000 genomes]
rs11726094	0.94[EUR][1000 genomes]
rs11726124	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs11726569	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11726674	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs11727189	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11727348	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs11727500	0.90[EUR][1000 genomes]
rs11727735	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11727745	1.00[CEU][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs11728044	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11728716	1.00[CEU][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs11728918	0.90[EUR][1000 genomes]
rs11729003	0.83[EUR][1000 genomes]
rs11730354	0.94[EUR][1000 genomes]
rs11730365	0.94[EUR][1000 genomes]
rs11730660	0.88[EUR][1000 genomes]
rs11731386	0.83[EUR][1000 genomes]
rs11731417	1.00[CEU][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs11731714	0.83[EUR][1000 genomes]
rs11731938	0.90[EUR][1000 genomes]
rs11732298	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs11732629	0.94[EUR][1000 genomes]
rs11732650	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11733093	0.90[EUR][1000 genomes]
rs11733124	0.86[EUR][1000 genomes]
rs11733150	0.94[EUR][1000 genomes]
rs11733223	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs11733225	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11733287	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs11733654	0.90[EUR][1000 genomes]
rs11734568	0.86[EUR][1000 genomes]
rs11734571	0.86[EUR][1000 genomes]
rs11735527	0.86[EUR][1000 genomes]
rs11735851	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11736834	0.86[EUR][1000 genomes]
rs11736859	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11737335	0.83[EUR][1000 genomes]
rs11737741	0.83[EUR][1000 genomes]
rs12331437	0.91[ASW][hapmap]
rs12374256	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036105	0.83[EUR][1000 genomes]
rs17036120	0.83[EUR][1000 genomes]
rs17036123	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs17036125	0.83[EUR][1000 genomes]
rs17036129	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs17036139	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs17036142	1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs17036156	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs17036177	0.86[EUR][1000 genomes]
rs17036189	0.86[EUR][1000 genomes]
rs17036225	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs17036230	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs17036258	0.90[EUR][1000 genomes]
rs17036292	0.90[EUR][1000 genomes]
rs17036308	0.94[EUR][1000 genomes]
rs17036310	0.94[EUR][1000 genomes]
rs17036327	0.94[EUR][1000 genomes]
rs17036341	0.88[EUR][1000 genomes]
rs17331332	0.87[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs28488297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34072732	0.83[EUR][1000 genomes]
rs35370743	0.83[EUR][1000 genomes]
rs35808787	0.86[EUR][1000 genomes]
rs4373160	0.83[EUR][1000 genomes]
rs58775257	0.88[EUR][1000 genomes]
rs59462153	0.86[EUR][1000 genomes]
rs67277942	0.88[EUR][1000 genomes]
rs72671805	0.83[EUR][1000 genomes]
rs72671808	0.83[EUR][1000 genomes]
rs72671809	0.83[EUR][1000 genomes]
rs72671810	0.83[EUR][1000 genomes]
rs72671811	0.83[EUR][1000 genomes]
rs72671815	0.83[EUR][1000 genomes]
rs72671820	0.83[EUR][1000 genomes]
rs72671824	0.83[EUR][1000 genomes]
rs72671826	0.83[EUR][1000 genomes]
rs72671828	0.83[EUR][1000 genomes]
rs72671835	0.83[EUR][1000 genomes]
rs72671836	0.83[EUR][1000 genomes]
rs72671837	0.83[EUR][1000 genomes]
rs72671840	0.83[EUR][1000 genomes]
rs72671844	0.83[EUR][1000 genomes]
rs72671849	0.83[EUR][1000 genomes]
rs72671852	0.83[EUR][1000 genomes]
rs72671853	0.81[EUR][1000 genomes]
rs72671854	0.83[EUR][1000 genomes]
rs72671855	0.83[EUR][1000 genomes]
rs72671856	0.83[EUR][1000 genomes]
rs72671858	0.83[EUR][1000 genomes]
rs72671861	0.83[EUR][1000 genomes]
rs72671862	0.83[EUR][1000 genomes]
rs72671863	0.83[EUR][1000 genomes]
rs72671866	0.86[EUR][1000 genomes]
rs72671869	0.86[EUR][1000 genomes]
rs72671870	0.86[EUR][1000 genomes]
rs72671871	0.86[EUR][1000 genomes]
rs72671873	0.86[EUR][1000 genomes]
rs72671874	0.86[EUR][1000 genomes]
rs72671878	0.86[EUR][1000 genomes]
rs72671879	0.86[EUR][1000 genomes]
rs72671880	0.86[EUR][1000 genomes]
rs72671881	0.86[EUR][1000 genomes]
rs72671885	0.86[EUR][1000 genomes]
rs72671886	0.86[EUR][1000 genomes]
rs72671889	0.86[EUR][1000 genomes]
rs72671892	0.86[EUR][1000 genomes]
rs72671895	0.86[EUR][1000 genomes]
rs72671896	0.86[EUR][1000 genomes]
rs72673803	0.86[EUR][1000 genomes]
rs72673805	0.86[EUR][1000 genomes]
rs72673811	0.86[EUR][1000 genomes]
rs72673812	0.86[EUR][1000 genomes]
rs72673813	0.86[EUR][1000 genomes]
rs72673817	0.86[EUR][1000 genomes]
rs72673822	0.90[EUR][1000 genomes]
rs72673823	0.90[EUR][1000 genomes]
rs72673824	0.90[EUR][1000 genomes]
rs72673828	0.90[EUR][1000 genomes]
rs72673831	0.90[EUR][1000 genomes]
rs72673832	0.90[EUR][1000 genomes]
rs72673834	0.90[EUR][1000 genomes]
rs72673853	0.94[EUR][1000 genomes]
rs72673855	0.94[EUR][1000 genomes]
rs72673858	0.94[EUR][1000 genomes]
rs72673860	0.94[EUR][1000 genomes]
rs72673865	0.94[EUR][1000 genomes]
rs72673870	0.94[EUR][1000 genomes]
rs72673872	0.94[EUR][1000 genomes]
rs72673873	0.94[EUR][1000 genomes]
rs72673888	0.88[EUR][1000 genomes]
rs72673889	0.88[EUR][1000 genomes]
rs72673891	0.88[EUR][1000 genomes]
rs7676975	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10050159	INTS12	Cis_1M	lymphoblastoid	RTeQTL
rs10050159	INTS12	cis	lymphoblastoid	seeQTL

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106737000-106768600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:106742000-106766200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:106742400-106766600	Weak transcription	Aorta	Aorta
4	chr4:106743600-106768600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:106744000-106768600	Weak transcription	Adipose Nuclei	Adipose
6	chr4:106745800-106769000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:106746000-106772200	Weak transcription	Left Ventricle	heart
8	chr4:106746400-106776400	Weak transcription	Gastric	stomach
9	chr4:106747000-106768200	Weak transcription	K562	blood
10	chr4:106747000-106771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:106747400-106767000	Weak transcription	A549	lung
12	chr4:106747400-106772000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:106751200-106766200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:106751800-106767800	Weak transcription	NH-A	brain
15	chr4:106752600-106766600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:106753800-106772000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:106754000-106766400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:106754600-106772400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:106755000-106769000	Weak transcription	Right Ventricle	heart
20	chr4:106755600-106766800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:106755600-106779800	Weak transcription	Esophagus	oesophagus
22	chr4:106756400-106768000	Weak transcription	HMEC	breast
23	chr4:106756600-106768600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:106756800-106770200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:106757200-106766400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:106757200-106767200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:106757200-106779200	Weak transcription	GM12878-XiMat	blood
28	chr4:106757400-106768400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:106757600-106766000	Weak transcription	Spleen	Spleen
30	chr4:106757600-106766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:106757800-106766000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:106757800-106768600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:106757800-106768800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:106758000-106766600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:106758000-106768400	Weak transcription	Ovary	ovary
36	chr4:106758000-106771800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:106758000-106772400	Weak transcription	Thymus	Thymus
38	chr4:106758000-106773000	Weak transcription	Fetal Stomach	stomach
39	chr4:106758000-106779000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:106758600-106770000	Weak transcription	Liver	Liver
41	chr4:106758600-106772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:106758600-106781200	Weak transcription	Pancreas	Pancrea
43	chr4:106759400-106766400	Weak transcription	Fetal Thymus	thymus
44	chr4:106759400-106766600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:106759600-106770200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:106759600-106772400	Weak transcription	HepG2	liver
47	chr4:106759800-106766400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:106760400-106768600	Weak transcription	NHLF	lung
49	chr4:106762000-106766000	Weak transcription	Stomach Mucosa	stomach
50	chr4:106762800-106770000	Weak transcription	Fetal Muscle Leg	muscle

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