Variant report

Variant	rs11733225
Chromosome Location	chr4:106705363-106705364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10050159	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10050333	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10516525	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516526	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516527	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516528	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516529	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11097901	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11722225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11723225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724839	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724884	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11725523	1.00[CEU][hapmap]
rs11726094	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726124	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726569	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11726674	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727189	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727348	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11727500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727735	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11727745	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728044	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11728716	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11728918	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729003	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11730354	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730365	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730660	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11731386	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731417	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731714	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11731938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11732298	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11732629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732650	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11733124	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733150	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733223	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11733287	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734568	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11734571	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735213	1.00[CEU][hapmap]
rs11735527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735851	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11736834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11736859	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11737335	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11737741	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12374256	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1374531	1.00[CEU][hapmap]
rs17035917	1.00[CEU][hapmap]
rs17035960	0.86[CEU][hapmap]
rs17036090	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17036105	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036120	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036123	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036125	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036129	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036139	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036142	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036156	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036189	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036225	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036230	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036308	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036310	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17036337	0.88[AMR][1000 genomes]
rs17036341	0.85[EUR][1000 genomes]
rs17331332	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28488297	0.86[EUR][1000 genomes]
rs34072732	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35370743	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35808787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35856766	1.00[AFR][1000 genomes]
rs4373160	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58775257	0.85[EUR][1000 genomes]
rs59462153	0.83[EUR][1000 genomes]
rs67277942	0.85[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72669998	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72671805	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671808	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671809	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671810	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671811	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671815	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671820	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671824	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671826	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671828	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671835	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671836	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671837	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671840	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671844	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671849	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671852	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671853	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72671854	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671855	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671856	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671858	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671861	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671862	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671863	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671869	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671871	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671874	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671878	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671879	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671880	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671881	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671885	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671886	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671892	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671895	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72671896	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673803	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673805	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673812	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673817	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673821	0.92[AMR][1000 genomes]
rs72673822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673824	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673828	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673831	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673853	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673855	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673858	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673860	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673865	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673870	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673872	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673873	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72673888	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673889	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72673890	0.84[AMR][1000 genomes]
rs72673891	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7676975	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11733225	INTS12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106688400-106708200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:106689400-106706000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:106690800-106706000	Weak transcription	Fetal Heart	heart
4	chr4:106691400-106706400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106694000-106718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
8	chr4:106697200-106725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:106697800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106698000-106725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:106698200-106719200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:106701000-106707400	Weak transcription	NHLF	lung
13	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood

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