Variant report

Variant	rs17036027
Chromosome Location	chr4:106556518-106556519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106551066..106553304-chr4:106554764..106557065,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11725523	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11726569	0.80[AMR][1000 genomes]
rs11727189	0.80[AMR][1000 genomes]
rs11728044	0.80[AMR][1000 genomes]
rs11731386	0.80[AMR][1000 genomes]
rs11735213	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1374531	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17035917	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17035960	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17035971	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036052	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036066	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17036076	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17036090	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17036105	0.84[AMR][1000 genomes]
rs17036120	0.80[AMR][1000 genomes]
rs17036123	0.80[AMR][1000 genomes]
rs17036125	0.80[AMR][1000 genomes]
rs17036129	0.84[AMR][1000 genomes]
rs34072732	0.80[AMR][1000 genomes]
rs35370743	0.84[AMR][1000 genomes]
rs72669961	0.80[EUR][1000 genomes]
rs72669971	0.82[EUR][1000 genomes]
rs72669972	0.82[AMR][1000 genomes]
rs72669974	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669978	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669980	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669981	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669982	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72669986	0.88[EUR][1000 genomes]
rs72669992	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669993	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669995	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72669997	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72669998	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72670002	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72671805	0.80[AMR][1000 genomes]
rs72671808	0.80[AMR][1000 genomes]
rs72671809	0.80[AMR][1000 genomes]
rs72671810	0.84[AMR][1000 genomes]
rs72671811	0.80[AMR][1000 genomes]
rs72671815	0.80[AMR][1000 genomes]
rs72671820	0.84[AMR][1000 genomes]
rs72671824	0.80[AMR][1000 genomes]
rs72671826	0.84[AMR][1000 genomes]
rs72671828	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
4	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
5	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
6	chr4:106549600-106558600	Weak transcription	Gastric	stomach
7	chr4:106550600-106559400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:106552400-106558400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:106552800-106558200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:106552800-106558400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:106552800-106558400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:106553200-106559000	Weak transcription	Fetal Kidney	kidney
13	chr4:106553600-106558800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:106554000-106558600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:106554800-106558400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:106555000-106557200	Enhancers	Fetal Brain Male	brain
17	chr4:106555200-106558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:106555400-106558400	Weak transcription	Small Intestine	intestine
19	chr4:106555400-106558400	Weak transcription	NHEK	skin
20	chr4:106555400-106558600	Weak transcription	Stomach Mucosa	stomach
21	chr4:106555400-106558600	Weak transcription	HMEC	breast
22	chr4:106556000-106558000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:106556000-106558200	Weak transcription	Brain Anterior Caudate	brain
24	chr4:106556000-106558600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:106556000-106558600	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:106556000-106558600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:106556000-106558600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:106556200-106556800	Enhancers	Fetal Heart	heart
29	chr4:106556200-106558200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:106556200-106558600	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:106556400-106556600	Enhancers	Fetal Lung	lung
32	chr4:106556400-106556600	Enhancers	HSMM	muscle
33	chr4:106556400-106556800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:106556400-106558400	Weak transcription	GM12878-XiMat	blood

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