Variant report

Variant	rs1733279
Chromosome Location	chr3:109403924-109403925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:109395334..109397068-chr3:109401413..109404015,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10433383	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1121961	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1163728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1164084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12053898	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12635237	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1406493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529186	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1534630	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16855836	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16855885	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2222784	0.84[ASN][1000 genomes]
rs57304427	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281684	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62281690	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62281691	0.81[ASN][1000 genomes]
rs62281694	0.81[ASN][1000 genomes]
rs62281700	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281710	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109402000-109404000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:109402400-109404000	Enhancers	Osteobl	bone
3	chr3:109402600-109406800	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:109402800-109404000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:109403600-109405200	Enhancers	Colon Smooth Muscle	Colon
6	chr3:109403600-109405200	Enhancers	Pancreas	Pancrea
7	chr3:109403600-109405200	Enhancers	Stomach Mucosa	stomach
8	chr3:109403600-109405200	Enhancers	HMEC	breast
9	chr3:109403800-109404000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:109403800-109404200	Enhancers	Stomach Smooth Muscle	stomach
11	chr3:109403800-109404400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr3:109403800-109405000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:109403800-109405000	Enhancers	NH-A	brain
14	chr3:109403800-109405200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:109403800-109405200	Enhancers	Hela-S3	cervix

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