Variant report

Variant	rs62281691
Chromosome Location	chr3:109362883-109362884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr3:109362349-109362952	HCT-116	colon:	n/a	n/a
2	NR2F2	chr3:109362417-109362910	MCF-7	breast:	n/a	chr3:109362653-109362668
3	CBX3	chr3:109362448-109362918	HCT-116	colon:	n/a	n/a
4	JUND	chr3:109362372-109362974	SK-N-SH	brain:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
5	JUND	chr3:109362365-109362905	Hela-S3	cervix:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
6	CBX3	chr3:109362343-109362888	HCT-116	colon:	n/a	n/a
7	FOSL1	chr3:109362313-109362913	HCT-116	colon:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362641-109362649
8	ATF3	chr3:109362493-109362910	HCT-116	colon:	n/a	chr3:109362635-109362649
9	JUND	chr3:109362439-109362916	MCF-7	breast:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
10	EP300	chr3:109362396-109363006	SK-N-SH	brain:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362801-109362811
11	JUND	chr3:109362338-109362970	SK-N-SH	brain:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
12	RXRA	chr3:109362376-109362938	SK-N-SH	brain:	n/a	chr3:109362656-109362665 chr3:109362641-109362650 chr3:109362640-109362649
13	JUND	chr3:109362349-109362987	SK-N-SH	brain:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
14	RXRA	chr3:109362292-109362907	SK-N-SH	brain:	n/a	chr3:109362656-109362665 chr3:109362641-109362650 chr3:109362640-109362649
15	JUND	chr3:109362315-109363001	HCT-116	colon:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
16	JUND	chr3:109362294-109363021	HCT-116	colon:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362604-109362615 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362639-109362650 chr3:109362641-109362649
17	SP1	chr3:109362388-109362915	HCT-116	colon:	n/a	n/a
18	FOS	chr3:109362446-109362892	Hela-S3	cervix:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362641-109362649
19	GATA3	chr3:109362181-109363054	SK-N-SH	brain:	n/a	chr3:109362756-109362764
20	GATA3	chr3:109362297-109362981	SK-N-SH	brain:	n/a	chr3:109362756-109362764
21	SRF	chr3:109362444-109362914	HCT-116	colon:	n/a	n/a
22	FOSL1	chr3:109362317-109363022	HCT-116	colon:	n/a	chr3:109362641-109362650 chr3:109362640-109362649 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362641-109362649
23	NFIC	chr3:109362277-109363001	SK-N-SH	brain:	n/a	n/a
24	FOSL2	chr3:109362347-109362938	SK-N-SH	brain:	n/a	chr3:109362641-109362650 chr3:109362640-109362651 chr3:109362640-109362649 chr3:109362642-109362649 chr3:109362640-109362650 chr3:109362641-109362649
25	PBX3	chr3:109362417-109362893	SK-N-SH	brain:	n/a	n/a
26	TCF12	chr3:109362384-109362923	SK-N-SH	brain:	n/a	n/a
27	TCF12	chr3:109362349-109362982	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000242029	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1121961	0.83[ASN][1000 genomes]
rs1163728	0.81[ASN][1000 genomes]
rs12053898	0.94[ASN][1000 genomes]
rs12635237	0.94[ASN][1000 genomes]
rs1406493	0.82[ASN][1000 genomes]
rs1529186	0.94[ASN][1000 genomes]
rs1534630	0.84[ASN][1000 genomes]
rs16855836	0.84[ASN][1000 genomes]
rs16855885	0.99[ASN][1000 genomes]
rs1733279	0.81[ASN][1000 genomes]
rs2222784	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57304427	0.99[ASN][1000 genomes]
rs62281690	0.84[ASN][1000 genomes]
rs62281694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281700	0.99[ASN][1000 genomes]
rs62281710	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460814	chr3:109195046-109381428	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591268	chr3:109195046-109381428	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109359800-109364000	Enhancers	Hela-S3	cervix
2	chr3:109361200-109364000	Enhancers	A549	lung
3	chr3:109361600-109364000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:109362600-109363200	Enhancers	NH-A	brain
5	chr3:109362600-109364000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:109362800-109364000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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