Variant report

Variant	rs62281694
Chromosome Location	chr3:109367141-109367142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1121961	0.83[ASN][1000 genomes]
rs1163728	0.81[ASN][1000 genomes]
rs12053898	0.94[ASN][1000 genomes]
rs12635237	0.94[ASN][1000 genomes]
rs1406493	0.82[ASN][1000 genomes]
rs1529186	0.94[ASN][1000 genomes]
rs1534630	0.84[ASN][1000 genomes]
rs16855836	0.84[ASN][1000 genomes]
rs16855885	0.99[ASN][1000 genomes]
rs1733279	0.81[ASN][1000 genomes]
rs2222784	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57304427	0.99[ASN][1000 genomes]
rs62281690	0.84[ASN][1000 genomes]
rs62281691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281700	0.99[ASN][1000 genomes]
rs62281710	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460814	chr3:109195046-109381428	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591268	chr3:109195046-109381428	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109366600-109367600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:109366800-109367400	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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