Variant report

Variant	rs17343157
Chromosome Location	chr10:90235351-90235352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509546	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1418481	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1418482	0.91[CEU][hapmap]
rs17111999	0.91[CEU][hapmap]
rs17343533	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3891849	0.91[CEU][hapmap]
rs4934396	0.91[CEU][hapmap]
rs4934402	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4934408	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4934413	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72820018	0.80[EUR][1000 genomes]
rs72820020	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72820026	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72820032	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72820049	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820074	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72820075	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90227600-90237000	Weak transcription	Left Ventricle	heart
2	chr10:90233000-90236000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90233800-90239200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:90234000-90235400	Enhancers	Hela-S3	cervix
5	chr10:90234000-90235600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:90234000-90235600	Enhancers	Liver	Liver
7	chr10:90234000-90235600	Enhancers	Ovary	ovary
8	chr10:90234200-90235400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:90234200-90235600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:90234200-90236000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:90234400-90235400	Enhancers	Fetal Heart	heart
12	chr10:90234400-90235600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:90234400-90235600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:90234400-90238200	Weak transcription	Right Ventricle	heart
15	chr10:90234600-90235600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:90234800-90235400	Enhancers	HSMM	muscle
17	chr10:90234800-90235800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:90235000-90235600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:90235000-90235800	Weak transcription	Pancreas	Pancrea
20	chr10:90235000-90236000	Enhancers	HMEC	breast
21	chr10:90235000-90237000	Weak transcription	Psoas Muscle	Psoas
22	chr10:90235000-90240400	Weak transcription	Aorta	Aorta
23	chr10:90235200-90237000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:90235200-90237200	Weak transcription	NHEK	skin

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