Variant report

Variant	rs1734383
Chromosome Location	chr2:10984698-10984699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10983477..10986559-chr2:11261395..11265674,4	MCF-7	breast:
2	chr2:10984035..10986902-chr2:10994929..10997652,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10184655	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565321	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565322	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565323	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631885	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1632749	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1686470	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686471	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686473	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686474	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686475	0.86[ASN][1000 genomes]
rs1686476	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686477	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734367	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1734371	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734372	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734373	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734374	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734375	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734376	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734377	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734378	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734379	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734381	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734384	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734385	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1734386	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734387	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357817	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2952623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2952625	0.88[ASN][1000 genomes]
rs2969888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669634	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10979400-11000400	Weak transcription	Fetal Brain Male	brain
2	chr2:10983400-10984800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:10983800-10984800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:10983800-10984800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:10983800-10984800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:10983800-10984800	Enhancers	Placenta	Placenta
7	chr2:10983800-10984800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr2:10983800-10985000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:10984000-10984800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:10984000-10984800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:10984000-10984800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:10984000-10984800	Enhancers	Duodenum Mucosa	Duodenum
13	chr2:10984000-10984800	Enhancers	Fetal Muscle Trunk	muscle
14	chr2:10984000-10984800	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr2:10984000-10984800	Enhancers	HSMMtube	muscle
16	chr2:10984200-10984800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:10984200-10984800	Enhancers	Adipose Nuclei	Adipose
18	chr2:10984200-10984800	Enhancers	Pancreas	Pancrea
19	chr2:10984200-10985400	Active TSS	Colon Smooth Muscle	Colon
20	chr2:10984200-10987000	Active TSS	Right Ventricle	heart
21	chr2:10984200-10987400	Enhancers	Fetal Heart	heart
22	chr2:10984400-10984800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:10984400-10984800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr2:10984400-10984800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr2:10984400-10984800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr2:10984400-10984800	Enhancers	Stomach Mucosa	stomach
27	chr2:10984400-10985800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr2:10984400-10986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:10984400-10986400	Active TSS	Left Ventricle	heart
30	chr2:10984400-10988000	Active TSS	Right Atrium	heart
31	chr2:10984400-10988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:10984600-10984800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr2:10984600-10984800	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr2:10984600-10984800	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr2:10984600-10984800	Flanking Active TSS	HSMM	muscle
36	chr2:10984600-10985000	Active TSS	Psoas Muscle	Psoas
37	chr2:10984600-10985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:10984600-10985800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr2:10984600-10986600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:10984600-10987000	Weak transcription	Lung	lung

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