Variant report

Variant	rs1734393
Chromosome Location	chr2:10986232-10986233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:10986197-10986918	A549	lung:	n/a	n/a
2	FOXA1	chr2:10986212-10986834	A549	lung:	n/a	n/a
3	NR3C1	chr2:10986220-10987035	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526
4	NR3C1	chr2:10986190-10987097	A549	lung:	n/a	chr2:10986512-10986526 chr2:10986506-10986532 chr2:10986512-10986526 chr2:10986511-10986527 chr2:10986511-10986527 chr2:10986449-10986475 chr2:10986508-10986529 chr2:10986510-10986528 chr2:10986506-10986532 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10987031-10987038 chr2:10986511-10986528 chr2:10986509-10986530 chr2:10986449-10986475 chr2:10986511-10986527 chr2:10986506-10986532 chr2:10986506-10986532 chr2:10986512-10986526

No.	Distal block	Cell Line	Cell type
1	chr2:10983477..10986559-chr2:11261395..11265674,4	MCF-7	breast:
2	chr2:10975730..10978665-chr2:10984710..10986250,2	K562	blood:
3	chr2:10984035..10986902-chr2:10994929..10997652,2	MCF-7	breast:
4	chr2:10975730..10978312-chr2:10984750..10987665,2	K562	blood:

Variant related genes	Relation type
ENSG00000232056	TF binding region
ENSG00000143870	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10184655	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565321	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565322	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565323	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631885	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1632749	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1686470	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686471	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1686473	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686474	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686475	0.86[ASN][1000 genomes]
rs1686476	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1686477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734367	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1734371	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734372	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734373	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734375	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734376	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734377	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734378	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734379	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734380	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734381	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1734382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734385	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1734386	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734387	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357817	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2952623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2952625	0.88[ASN][1000 genomes]
rs2969888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669634	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10979400-11000400	Weak transcription	Fetal Brain Male	brain
2	chr2:10984200-10987000	Active TSS	Right Ventricle	heart
3	chr2:10984200-10987400	Enhancers	Fetal Heart	heart
4	chr2:10984400-10986400	Active TSS	Left Ventricle	heart
5	chr2:10984400-10988000	Active TSS	Right Atrium	heart
6	chr2:10984400-10988600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:10984600-10986600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:10984600-10987000	Weak transcription	Lung	lung
9	chr2:10984800-10987000	Enhancers	Fetal Muscle Leg	muscle
10	chr2:10984800-10988800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:10985400-10986400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr2:10985400-10986800	Enhancers	Stomach Smooth Muscle	stomach
13	chr2:10985600-10986600	Enhancers	Psoas Muscle	Psoas
14	chr2:10985600-10986800	Enhancers	Colon Smooth Muscle	Colon
15	chr2:10985800-10986400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:10985800-10986400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:10985800-10987200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr2:10985800-10988000	Enhancers	HepG2	liver
19	chr2:10986000-10986800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:10986000-10987200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:10986000-10987200	Enhancers	Brain Anterior Caudate	brain
22	chr2:10986000-10988000	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:10986000-10988000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr2:10986000-10989000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:10986200-10986400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr2:10986200-10986400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr2:10986200-10987200	Weak transcription	Gastric	stomach

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