Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11707726	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1485717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1485734	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34787563	0.88[ASN][1000 genomes]
rs35595242	0.87[ASN][1000 genomes]
rs4679505	0.89[ASN][1000 genomes]
rs4679608	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs492836	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs517644	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs550626	0.96[ASN][1000 genomes]
rs55799227	0.92[ASN][1000 genomes]
rs56377327	0.92[ASN][1000 genomes]
rs575614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs659193	0.96[ASN][1000 genomes]
rs7616694	0.89[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780365	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs780370	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs810525	0.94[ASN][1000 genomes]
rs972795	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9813727	0.88[ASN][1000 genomes]
rs9817691	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590382	chr3:59763809-59793062	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17361653	DNAH12	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59760400-59776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:59761000-59772400	Weak transcription	Fetal Brain Male	brain
3	chr3:59769800-59791400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:59770000-59779000	Weak transcription	Thymus	Thymus
5	chr3:59770200-59775800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:59770400-59774000	Weak transcription	Fetal Thymus	thymus
7	chr3:59770400-59775800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:59770400-59776600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:59770600-59776200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:59770800-59773800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:59770800-59773800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:59771000-59773600	Strong transcription	Primary T cells from cord blood	blood
14	chr3:59771000-59775600	Weak transcription	Dnd41	blood
15	chr3:59771400-59772600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:59771400-59773000	Enhancers	Pancreatic Islets	Pancreatic Islet

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