Variant report

Variant	rs56377327
Chromosome Location	chr3:59769631-59769632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11707726	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1485717	0.95[ASN][1000 genomes]
rs1485734	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17361653	0.92[ASN][1000 genomes]
rs34787563	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35595242	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4679505	0.87[ASN][1000 genomes]
rs4679608	0.89[ASN][1000 genomes]
rs4679610	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs492836	0.87[ASN][1000 genomes]
rs517644	0.87[ASN][1000 genomes]
rs550626	0.92[ASN][1000 genomes]
rs55799227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575614	0.87[ASN][1000 genomes]
rs659193	0.92[ASN][1000 genomes]
rs7616694	0.91[ASN][1000 genomes]
rs780365	0.87[ASN][1000 genomes]
rs780370	0.89[ASN][1000 genomes]
rs810525	0.94[ASN][1000 genomes]
rs972795	0.82[ASN][1000 genomes]
rs9813727	0.86[ASN][1000 genomes]
rs9817691	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590382	chr3:59763809-59793062	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59760400-59776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:59761000-59772400	Weak transcription	Fetal Brain Male	brain
3	chr3:59762000-59770000	Weak transcription	Fetal Thymus	thymus
4	chr3:59764200-59770000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:59765600-59770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:59768800-59770800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:59769000-59770800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:59769200-59770400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:59769200-59770400	Genic enhancers	Dnd41	blood
10	chr3:59769200-59770600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:59769400-59770200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:59769400-59770400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:59769400-59770400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:59769400-59770400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:59769400-59770400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:59769400-59770400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:59769400-59770400	Enhancers	GM12878-XiMat	blood
18	chr3:59769600-59769800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr3:59769600-59770000	Enhancers	Thymus	Thymus
20	chr3:59769600-59770200	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:59769600-59770400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:59769600-59770400	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:59769600-59770400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:59769600-59770400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:59769600-59770400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr3:59769600-59770600	Enhancers	HUES6 Cell Line	embryonic stem cell

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