Variant report

Variant	rs34787563
Chromosome Location	chr3:59759074-59759075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11707726	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13093788	0.86[EUR][1000 genomes]
rs1485717	0.88[ASN][1000 genomes]
rs1485734	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17361653	0.88[ASN][1000 genomes]
rs35595242	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4679505	0.92[ASN][1000 genomes]
rs4679608	0.92[ASN][1000 genomes]
rs4679610	0.86[EUR][1000 genomes]
rs492836	0.92[ASN][1000 genomes]
rs517644	0.93[ASN][1000 genomes]
rs550626	0.87[ASN][1000 genomes]
rs55799227	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56377327	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs575614	0.94[ASN][1000 genomes]
rs659193	0.87[ASN][1000 genomes]
rs7616694	0.85[ASN][1000 genomes]
rs780365	0.92[ASN][1000 genomes]
rs780370	0.90[ASN][1000 genomes]
rs810525	0.89[ASN][1000 genomes]
rs972795	0.89[ASN][1000 genomes]
rs9813727	0.92[ASN][1000 genomes]
rs9817691	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
2	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:59756600-59759400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:59757000-59759600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:59757200-59760000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:59757200-59760200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:59757200-59761200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:59757400-59760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:59757600-59759600	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:59758000-59759400	Enhancers	Primary B cells from cord blood	blood
15	chr3:59758000-59759400	Weak transcription	HSMMtube	muscle
16	chr3:59758000-59759600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:59758000-59759600	Flanking Active TSS	Dnd41	blood
18	chr3:59758000-59759600	Enhancers	GM12878-XiMat	blood
19	chr3:59758000-59759800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:59758000-59760000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:59758000-59760400	Weak transcription	NHEK	skin
22	chr3:59758000-59761200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:59758200-59759400	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr3:59758200-59759800	Weak transcription	NHDF-Ad	bronchial
25	chr3:59758200-59760000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:59758400-59759200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr3:59758400-59759200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr3:59758400-59759200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:59758400-59759400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr3:59758400-59759800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:59758400-59759800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:59758400-59759800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:59758400-59760000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:59758400-59760000	Weak transcription	A549	lung
35	chr3:59758600-59759200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr3:59758600-59759200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:59758600-59759800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:59758800-59759200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr3:59758800-59759400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr3:59758800-59759800	Weak transcription	HMEC	breast
41	chr3:59758800-59759800	Weak transcription	Osteobl	bone
42	chr3:59758800-59760000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:59758800-59760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:59759000-59759400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr3:59759000-59759600	Weak transcription	NH-A	brain
46	chr3:59759000-59759800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:59759000-59759800	Enhancers	Thymus	Thymus
48	chr3:59759000-59761000	Enhancers	Fetal Brain Male	brain
49	chr3:59759000-59761600	Enhancers	HSMM	muscle
50	chr3:59759000-59762800	Enhancers	Primary T helper cells PMA-I stimulated	--

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