Variant report

Variant	rs17366890
Chromosome Location	chr3:136636583-136636584
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136636446..136639325-chr3:136639955..136642368,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1048145	0.93[ASN][1000 genomes]
rs17301365	1.00[ASN][1000 genomes]
rs35127615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56308712	0.93[ASN][1000 genomes]
rs73230095	0.86[ASN][1000 genomes]
rs73231943	1.00[ASN][1000 genomes]
rs73231944	1.00[ASN][1000 genomes]
rs73231953	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73231958	1.00[ASN][1000 genomes]
rs73231966	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73231975	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:136613600-136638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:136619200-136656800	Weak transcription	NHLF	lung
4	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
5	chr3:136624600-136637600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:136624600-136639800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:136626000-136638400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:136626000-136646400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:136626200-136640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:136626400-136636600	Weak transcription	Right Ventricle	heart
12	chr3:136626400-136637400	Weak transcription	Left Ventricle	heart
13	chr3:136626400-136646800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:136626400-136647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:136626400-136648800	Weak transcription	HMEC	breast
16	chr3:136626400-136649200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:136626600-136650600	Weak transcription	Esophagus	oesophagus
18	chr3:136626600-136661000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:136628000-136637200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:136628000-136643600	Weak transcription	Small Intestine	intestine
21	chr3:136628800-136650600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:136631200-136639800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:136631600-136644200	Weak transcription	A549	lung
24	chr3:136632000-136640600	Weak transcription	Fetal Stomach	stomach
25	chr3:136632000-136643400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:136632000-136646800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:136632200-136638800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:136632400-136643400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:136632400-136646600	Weak transcription	Fetal Thymus	thymus
30	chr3:136632600-136657000	Weak transcription	HepG2	liver
31	chr3:136632800-136637800	Weak transcription	Primary B cells from cord blood	blood
32	chr3:136633000-136641800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr3:136633400-136638400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:136633400-136639400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:136633800-136639800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:136633800-136660200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:136634000-136636600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr3:136634000-136637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:136634000-136643400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr3:136634000-136643600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:136634000-136648200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:136634400-136639800	Weak transcription	Fetal Heart	heart
43	chr3:136634600-136639200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr3:136634800-136638000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr3:136634800-136640000	Weak transcription	Fetal Intestine Large	intestine
46	chr3:136634800-136640400	Enhancers	Dnd41	blood
47	chr3:136634800-136650200	Weak transcription	HSMM	muscle
48	chr3:136634800-136656800	Weak transcription	NH-A	brain
49	chr3:136635000-136639800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:136635000-136640000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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