Variant report

Variant	rs73230095
Chromosome Location	chr3:136545540-136545541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136540164..136541710-chr3:136544564..136546317,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1048145	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10513016	0.83[EUR][1000 genomes]
rs16844056	0.81[EUR][1000 genomes]
rs17301365	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17365351	0.83[EUR][1000 genomes]
rs17366890	0.86[ASN][1000 genomes]
rs17466223	0.83[EUR][1000 genomes]
rs35127615	0.83[AFR][1000 genomes]
rs56308712	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56888009	0.82[EUR][1000 genomes]
rs57466072	0.82[EUR][1000 genomes]
rs59361983	0.93[EUR][1000 genomes]
rs59616231	0.83[EUR][1000 genomes]
rs59696368	0.83[EUR][1000 genomes]
rs66471262	0.83[EUR][1000 genomes]
rs66637228	0.82[EUR][1000 genomes]
rs66739346	0.82[EUR][1000 genomes]
rs67231188	0.82[EUR][1000 genomes]
rs67236827	0.83[EUR][1000 genomes]
rs67546863	0.93[EUR][1000 genomes]
rs67923745	0.93[EUR][1000 genomes]
rs68018658	0.84[EUR][1000 genomes]
rs72975363	0.83[EUR][1000 genomes]
rs73230052	0.89[EUR][1000 genomes]
rs73230077	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73230078	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73231917	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73231937	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73231943	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73231944	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73231953	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73231958	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73231966	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73231974	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73231975	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7646563	0.82[EUR][1000 genomes]
rs7646723	0.82[EUR][1000 genomes]
rs923001	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73230095	IL20RB	cis	Nerve Tibial	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136539400-136547000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:136539800-136553600	Weak transcription	Hela-S3	cervix
3	chr3:136540800-136555200	Weak transcription	Dnd41	blood
4	chr3:136544000-136553400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:136544000-136554600	Weak transcription	Psoas Muscle	Psoas
6	chr3:136544600-136546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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