Variant report

Variant	rs59696368
Chromosome Location	chr3:136374097-136374098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844056	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17466223	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3931416	0.81[EUR][1000 genomes]
rs55763637	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218376	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56308712	0.81[EUR][1000 genomes]
rs56888009	0.96[EUR][1000 genomes]
rs57466072	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57681357	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58636237	0.85[EUR][1000 genomes]
rs59361983	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59616231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014495	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60270684	0.82[AFR][1000 genomes]
rs66470158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66471262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66637228	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66739346	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66902780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66973954	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67231188	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67236827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67281610	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67303976	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67305360	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67546863	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs67621498	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs67663578	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6773495	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs67794070	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs67888773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67902591	0.85[EUR][1000 genomes]
rs67923745	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68018658	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975363	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226130	0.81[EUR][1000 genomes]
rs73228025	0.91[EUR][1000 genomes]
rs73228037	0.94[EUR][1000 genomes]
rs73228040	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230052	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73230077	0.85[EUR][1000 genomes]
rs73230078	0.85[EUR][1000 genomes]
rs73230095	0.83[EUR][1000 genomes]
rs73231917	0.81[EUR][1000 genomes]
rs7636806	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7646563	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646723	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59696368	IL20RB	cis	Nerve Tibial	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
2	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
3	chr3:136364800-136377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:136365000-136396400	Weak transcription	Gastric	stomach
5	chr3:136365200-136381400	Weak transcription	Pancreas	Pancrea
6	chr3:136368200-136385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:136369000-136386800	Weak transcription	Lung	lung
8	chr3:136370600-136385400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:136370800-136382800	Weak transcription	Ovary	ovary
10	chr3:136371400-136374400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:136371600-136374400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr3:136371800-136374600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:136372000-136383200	Weak transcription	Aorta	Aorta
14	chr3:136372400-136375600	ZNF genes & repeats	Dnd41	blood
15	chr3:136372600-136374400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr3:136373000-136374200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:136373200-136374400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:136373600-136374200	ZNF genes & repeats	Fetal Kidney	kidney
19	chr3:136373800-136374200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:136373800-136374400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:136373800-136374600	Weak transcription	Fetal Lung	lung
22	chr3:136373800-136376200	Weak transcription	NHEK	skin
23	chr3:136373800-136377600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:136373800-136382600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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