Variant report

Variant	rs73231974
Chromosome Location	chr3:136659841-136659842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136658510..136660043-chr3:136661343..136664014,2	MCF-7	breast:
2	chr3:136657952..136660440-chr3:136666983..136671053,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1048145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35127615	1.00[ASN][1000 genomes]
rs56308712	0.91[EUR][1000 genomes]
rs59361983	0.82[EUR][1000 genomes]
rs67546863	0.82[EUR][1000 genomes]
rs67923745	0.82[EUR][1000 genomes]
rs73230077	0.85[EUR][1000 genomes]
rs73230078	0.85[EUR][1000 genomes]
rs73230095	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73231917	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73231937	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73231943	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73231944	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73231953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73231958	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73231966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73231975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73231974	IL20RB	cis	Nerve Tibial	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
2	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:136626600-136661000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:136633800-136660200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:136637600-136661400	Weak transcription	Left Ventricle	heart
6	chr3:136638800-136664400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:136639000-136664400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:136641000-136670000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:136643800-136661400	Weak transcription	Small Intestine	intestine
10	chr3:136645400-136664200	Weak transcription	Placenta	Placenta
11	chr3:136645800-136664600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:136646200-136660000	Weak transcription	Lung	lung
13	chr3:136646200-136664400	Weak transcription	Ovary	ovary
14	chr3:136646600-136673800	Weak transcription	Pancreas	Pancrea
15	chr3:136647600-136660800	Weak transcription	Thymus	Thymus
16	chr3:136647600-136661000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:136647600-136664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:136648600-136673800	Weak transcription	Fetal Intestine Small	intestine
19	chr3:136649000-136661200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:136650200-136666600	Weak transcription	Brain Angular Gyrus	brain
21	chr3:136650200-136669400	Weak transcription	Colonic Mucosa	Colon
22	chr3:136650800-136661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:136650800-136664400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:136651000-136661200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:136651000-136661400	Weak transcription	Esophagus	oesophagus
26	chr3:136652400-136661400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:136652400-136661800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:136652400-136664600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:136654000-136664400	Weak transcription	Fetal Stomach	stomach
30	chr3:136655600-136661000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:136655600-136664400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:136655600-136664600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:136655600-136664600	Weak transcription	Fetal Kidney	kidney
34	chr3:136655800-136661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:136655800-136662000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:136655800-136664400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:136656000-136660600	Weak transcription	Fetal Thymus	thymus
38	chr3:136656000-136664400	Weak transcription	Fetal Intestine Large	intestine
39	chr3:136656200-136662800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:136656400-136660600	Weak transcription	Psoas Muscle	Psoas
41	chr3:136656400-136661400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:136656400-136664400	Weak transcription	Primary B cells from cord blood	blood
43	chr3:136656400-136664400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:136656400-136664600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:136656400-136664600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:136656400-136681400	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:136656600-136660000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:136656600-136662000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr3:136656600-136662800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr3:136656800-136660200	Enhancers	Liver	Liver

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