Variant report
Variant | rs17370650 |
---|---|
Chromosome Location | chr20:15273460-15273461 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10485521 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10485523 | 1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10485524 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs12053601 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs17298444 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4334556 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4813180 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs55782362 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6034148 | 0.85[EUR][1000 genomes] |
rs6034150 | 0.84[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes] |
rs6034153 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6034161 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6043173 | 0.88[CHB][hapmap] |
rs6043185 | 0.90[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes] |
rs6043192 | 0.83[EUR][1000 genomes] |
rs6043226 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6043228 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6043229 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6043232 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6131663 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6131665 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6135376 | 0.87[AMR][1000 genomes] |
rs6135380 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6135381 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135382 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6135383 | 0.83[EUR][1000 genomes] |
rs6135385 | 0.87[ASW][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135389 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6135390 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs62203481 | 0.83[AMR][1000 genomes] |
rs62205198 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs62205201 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7261787 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs7270703 | 0.81[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7270966 | 0.81[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8120608 | 0.87[ASW][hapmap];0.81[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1065152 | chr20:14781684-15305258 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv524481 | chr20:15007730-15382919 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv916795 | chr20:15041479-15345528 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1060275 | chr20:15084485-15327541 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1058827 | chr20:15159151-15289719 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
8 | nsv1058890 | chr20:15234769-15388360 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
9 | esv2755557 | chr20:15250014-15323282 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15259400-15277600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |