Variant report
Variant | rs6135382 |
---|---|
Chromosome Location | chr20:15294064-15294065 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:15293454..15295061-chr20:15304426..15306908,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10485521 | 0.86[EUR][1000 genomes] |
rs10485523 | 0.83[EUR][1000 genomes] |
rs10485524 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12053601 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17298444 | 0.87[EUR][1000 genomes] |
rs17370650 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2876403 | 0.82[ASN][1000 genomes] |
rs4334556 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4813180 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs55782362 | 0.87[EUR][1000 genomes] |
rs6034148 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6034150 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6034153 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6034161 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6043185 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6043192 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6043194 | 0.81[ASN][1000 genomes] |
rs6043226 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6043228 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6043229 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6043232 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6131663 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6131665 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6135380 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6135381 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6135383 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6135385 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6135389 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6135390 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs62203481 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs62205198 | 0.87[EUR][1000 genomes] |
rs62205200 | 0.83[ASN][1000 genomes] |
rs62205201 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7261787 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7270703 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7270966 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1065152 | chr20:14781684-15305258 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv524481 | chr20:15007730-15382919 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv916795 | chr20:15041479-15345528 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1060275 | chr20:15084485-15327541 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1058890 | chr20:15234769-15388360 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
8 | esv2755557 | chr20:15250014-15323282 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv912787 | chr20:15275538-15309089 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv912788 | chr20:15275538-15332749 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv912789 | chr20:15275538-15352001 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | esv2757712 | chr20:15282448-15331007 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | esv2758786 | chr20:15282448-15331007 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | nsv585583 | chr20:15289701-15303701 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
15 | esv1830261 | chr20:15291552-15304048 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | nsv585584 | chr20:15292533-15303701 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15291600-15297000 | Weak transcription | Primary B cells from peripheral blood | blood |
2 | chr20:15293800-15294200 | Weak transcription | Primary monocytes fromperipheralblood | blood |