Variant report

Variant	rs17378702
Chromosome Location	chr10:90834280-90834281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509564	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10509565	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10887906	0.84[ASN][1000 genomes]
rs10887913	0.96[ASN][1000 genomes]
rs11202956	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11202968	0.97[ASN][1000 genomes]
rs11202971	0.97[ASN][1000 genomes]
rs11202973	0.94[ASN][1000 genomes]
rs11202974	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11202978	0.94[ASN][1000 genomes]
rs11202984	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11202986	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11202987	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11202990	0.96[ASN][1000 genomes]
rs11202991	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11202992	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11202995	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11202996	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12359686	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1344234	0.81[ASN][1000 genomes]
rs17378555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17378695	0.82[YRI][hapmap]
rs17380509	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17380676	0.96[ASN][1000 genomes]
rs17463822	0.97[ASN][1000 genomes]
rs17464831	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17464997	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17465248	0.96[ASN][1000 genomes]
rs1937324	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2154249	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2154250	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2256329	0.84[ASN][1000 genomes]
rs2494647	0.81[ASN][1000 genomes]
rs28461567	0.96[ASN][1000 genomes]
rs28533190	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2863221	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2902448	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7094057	0.97[ASN][1000 genomes]
rs72810981	0.96[ASN][1000 genomes]
rs72810994	0.97[ASN][1000 genomes]
rs72812827	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812830	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812831	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812833	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812834	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812845	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812848	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812849	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812851	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812855	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812859	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812862	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72812886	0.93[ASN][1000 genomes]
rs72812889	0.96[ASN][1000 genomes]
rs72812894	0.87[ASN][1000 genomes]
rs7896854	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90830400-90841800	Weak transcription	Left Ventricle	heart
2	chr10:90833000-90834400	Enhancers	Osteobl	bone
3	chr10:90833200-90834400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:90833400-90834400	Enhancers	Psoas Muscle	Psoas
5	chr10:90833600-90834400	Enhancers	Adipose Nuclei	Adipose
6	chr10:90833600-90834400	Enhancers	Stomach Mucosa	stomach
7	chr10:90833600-90834800	Enhancers	Ovary	ovary
8	chr10:90833800-90834400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:90833800-90837400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:90833800-90838600	Weak transcription	K562	blood
11	chr10:90834000-90834400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:90834000-90834400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:90834200-90834400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:90834200-90834800	Enhancers	GM12878-XiMat	blood
15	chr10:90834200-90834800	Enhancers	HUVEC	blood vessel
16	chr10:90834200-90835000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:90834200-90836800	Weak transcription	NHDF-Ad	bronchial
18	chr10:90834200-90837400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:90834200-90837400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:90834200-90837600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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