Variant report

Variant	rs2494647
Chromosome Location	chr10:90882921-90882922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509564	0.85[ASN][1000 genomes]
rs10509565	0.85[ASN][1000 genomes]
rs10887913	0.85[ASN][1000 genomes]
rs11202956	0.81[ASN][1000 genomes]
rs11202968	0.83[ASN][1000 genomes]
rs11202971	0.83[ASN][1000 genomes]
rs11202973	0.81[ASN][1000 genomes]
rs11202974	0.83[ASN][1000 genomes]
rs11202978	0.81[ASN][1000 genomes]
rs11202984	0.85[ASN][1000 genomes]
rs11202986	0.85[ASN][1000 genomes]
rs11202987	0.85[ASN][1000 genomes]
rs11202990	0.85[ASN][1000 genomes]
rs11202991	0.85[ASN][1000 genomes]
rs11202992	0.85[ASN][1000 genomes]
rs11202995	1.00[JPT][hapmap]
rs11202996	1.00[JPT][hapmap]
rs12359686	0.85[ASN][1000 genomes]
rs1344234	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17378555	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17378702	0.81[ASN][1000 genomes]
rs17380509	0.85[ASN][1000 genomes]
rs17380676	0.85[ASN][1000 genomes]
rs17463822	0.83[ASN][1000 genomes]
rs17464831	0.85[ASN][1000 genomes]
rs17464997	0.85[ASN][1000 genomes]
rs17465248	0.85[ASN][1000 genomes]
rs1937324	0.81[ASN][1000 genomes]
rs1937331	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1937344	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1937346	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2154249	0.85[ASN][1000 genomes]
rs2154250	0.85[ASN][1000 genomes]
rs2256329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2494650	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2801522	0.81[CEU][hapmap]
rs2801540	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28461567	0.85[ASN][1000 genomes]
rs28533190	0.85[ASN][1000 genomes]
rs2863221	0.81[ASN][1000 genomes]
rs2902448	0.82[ASN][1000 genomes]
rs4481939	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7094057	0.83[ASN][1000 genomes]
rs7099595	0.88[CEU][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs72810994	0.83[ASN][1000 genomes]
rs72812827	0.85[ASN][1000 genomes]
rs72812830	0.85[ASN][1000 genomes]
rs72812831	0.85[ASN][1000 genomes]
rs72812833	0.85[ASN][1000 genomes]
rs72812834	0.85[ASN][1000 genomes]
rs72812845	0.85[ASN][1000 genomes]
rs72812848	0.85[ASN][1000 genomes]
rs72812849	0.85[ASN][1000 genomes]
rs72812851	0.85[ASN][1000 genomes]
rs72812855	0.85[ASN][1000 genomes]
rs72812859	0.85[ASN][1000 genomes]
rs72812862	0.85[ASN][1000 genomes]
rs72812886	0.82[ASN][1000 genomes]
rs72812889	0.85[ASN][1000 genomes]
rs7896854	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv551844	chr10:90879304-90899444	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90876200-90883200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:90878400-90889600	Weak transcription	NHLF	lung
3	chr10:90878600-90888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90878800-90888000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:90880600-90883000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:90880600-90884200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:90881400-90889000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:90882000-90883000	Enhancers	HUVEC	blood vessel
9	chr10:90882200-90883000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:90882400-90889200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:90882800-90883200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:90882800-90888000	Weak transcription	NHDF-Ad	bronchial
13	chr10:90882800-90888000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links