Variant report

Variant	rs17463822
Chromosome Location	chr10:90845205-90845206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90836807..90840202-chr10:90842627..90846044,3	K562	blood:
2	chr10:90837544..90840360-chr10:90843799..90846492,3	K562	blood:
3	chr10:90843656..90845786-chr10:90848241..90850015,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10509564	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10509565	0.99[ASN][1000 genomes]
rs10887906	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10887913	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202956	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202968	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202969	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202974	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202982	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11202984	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202986	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202987	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202990	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202991	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202992	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202995	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11202996	0.91[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap]
rs12359678	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12359686	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1344234	0.83[ASN][1000 genomes]
rs17378555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17378695	0.94[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17378702	0.97[ASN][1000 genomes]
rs17380509	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17380676	0.99[ASN][1000 genomes]
rs17450261	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17450388	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17464831	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17464997	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17465248	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1937324	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2154249	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2154250	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256329	0.87[ASN][1000 genomes]
rs2494647	0.83[ASN][1000 genomes]
rs28461567	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28533190	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2863221	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2902448	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7073449	0.85[EUR][1000 genomes]
rs7094057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810969	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72810994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812827	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812830	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812831	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812833	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812834	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812845	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812848	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812849	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812851	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812855	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812859	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72812862	0.99[ASN][1000 genomes]
rs72812886	0.96[ASN][1000 genomes]
rs72812889	0.99[ASN][1000 genomes]
rs72812894	0.87[ASN][1000 genomes]
rs7896854	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv467418	chr10:90826252-90874468	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv551843	chr10:90826252-90874468	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2829934	chr10:90826779-90874468	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17463822	MINPP1	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90840200-90846000	Weak transcription	Adipose Nuclei	Adipose
2	chr10:90840800-90846400	Weak transcription	K562	blood
3	chr10:90841000-90846200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:90841800-90861000	Weak transcription	Aorta	Aorta
5	chr10:90842000-90851600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:90842200-90846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:90842400-90846600	Weak transcription	Left Ventricle	heart
8	chr10:90843000-90845600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:90843200-90845400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:90843600-90845400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:90843800-90847400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:90844000-90845800	Enhancers	Dnd41	blood
13	chr10:90844200-90845400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:90844200-90845400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90844200-90850400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:90844400-90845800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:90844400-90846200	Enhancers	NHDF-Ad	bronchial
18	chr10:90844400-90846400	Enhancers	NHLF	lung
19	chr10:90844400-90847400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:90844600-90845400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:90844600-90846200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:90844600-90846600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:90844600-90847200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:90845000-90845400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr10:90845000-90845400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:90845000-90845400	Enhancers	Brain Anterior Caudate	brain
27	chr10:90845000-90845400	Enhancers	Brain Substantia Nigra	brain
28	chr10:90845000-90845600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:90845000-90846000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:90845000-90846000	Weak transcription	HSMMtube	muscle
31	chr10:90845000-90846200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:90845000-90846600	Weak transcription	GM12878-XiMat	blood
33	chr10:90845200-90845400	Enhancers	Brain Angular Gyrus	brain
34	chr10:90845200-90845400	Enhancers	Small Intestine	intestine
35	chr10:90845200-90845800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:90845200-90846200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:90845200-90846400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:90845200-90846600	Weak transcription	Psoas Muscle	Psoas
39	chr10:90845200-90850600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:90845200-90855000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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