Variant report

Variant	rs17450388
Chromosome Location	chr10:90817785-90817786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10509564	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10887913	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202933	1.00[ASN][1000 genomes]
rs11202944	1.00[ASN][1000 genomes]
rs11202956	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11202968	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202969	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202971	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11202973	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202974	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202978	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11202982	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202984	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11202986	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202987	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202990	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202991	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202992	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12249543	1.00[ASN][1000 genomes]
rs12354466	1.00[ASN][1000 genomes]
rs12355223	1.00[ASN][1000 genomes]
rs12359678	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359686	0.89[AMR][1000 genomes]
rs12360110	1.00[ASN][1000 genomes]
rs17378555	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17378695	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380509	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17449991	1.00[ASN][1000 genomes]
rs17450261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463822	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17464831	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17464997	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17465248	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1937324	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1937340	1.00[ASN][1000 genomes]
rs2154249	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2154250	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28461567	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28533190	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28562823	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863221	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2902448	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67116800	1.00[ASN][1000 genomes]
rs67162474	1.00[ASN][1000 genomes]
rs68099265	1.00[ASN][1000 genomes]
rs7094057	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72810915	1.00[ASN][1000 genomes]
rs72810935	1.00[ASN][1000 genomes]
rs72810957	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72810964	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810969	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810981	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810994	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72812827	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812830	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812831	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812833	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812834	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812845	0.85[AMR][1000 genomes]
rs72812848	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812849	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812851	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812855	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812859	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72812860	1.00[ASN][1000 genomes]
rs73355387	1.00[ASN][1000 genomes]
rs73365626	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
2	chr10:90803200-90825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90807800-90822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90807800-90825000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90808000-90823800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:90811400-90822600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:90817000-90822600	Weak transcription	Ovary	ovary
8	chr10:90817200-90818800	Weak transcription	NHLF	lung

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