Variant report

Variant	rs73365626
Chromosome Location	chr10:90798442-90798443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11202933	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202944	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202982	1.00[ASN][1000 genomes]
rs12249543	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354466	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355223	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359678	1.00[ASN][1000 genomes]
rs12360110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17378695	1.00[ASN][1000 genomes]
rs17449991	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450261	1.00[ASN][1000 genomes]
rs17450388	1.00[ASN][1000 genomes]
rs1937340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562823	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67116800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67162474	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68099265	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810915	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810935	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810957	1.00[ASN][1000 genomes]
rs72810964	1.00[ASN][1000 genomes]
rs72810969	1.00[ASN][1000 genomes]
rs72812860	1.00[ASN][1000 genomes]
rs73355387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3345168	chr10:90793772-90798470	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
5	esv10647	chr10:90794988-90803055	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3335977	chr10:90795772-90803270	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3368471	chr10:90796972-90803370	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:90789800-90802000	Weak transcription	Ovary	ovary
4	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
8	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
13	chr10:90793000-90801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:90793200-90801600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:90793200-90801800	Weak transcription	HMEC	breast
16	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
17	chr10:90795800-90801800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:90795800-90803800	Weak transcription	Right Atrium	heart
19	chr10:90796000-90807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links