Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12314653	0.82[ASN][1000 genomes]
rs12315774	0.82[ASN][1000 genomes]
rs12316258	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12582448	0.94[ASN][1000 genomes]
rs12810386	0.95[ASN][1000 genomes]
rs12818201	0.95[ASN][1000 genomes]
rs1480036	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs16930329	0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs34004743	0.85[ASN][1000 genomes]
rs34218011	0.95[ASN][1000 genomes]
rs34583201	0.94[ASN][1000 genomes]
rs35722594	0.95[ASN][1000 genomes]
rs3809138	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58747679	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61914465	0.82[ASN][1000 genomes]
rs7134738	0.89[JPT][hapmap]
rs7955859	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7958409	0.80[ASN][1000 genomes]
rs7976236	0.82[ASN][1000 genomes]
rs875295	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17380837	SSPN	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26338800-26348200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:26341800-26348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:26341800-26348000	Weak transcription	A549	lung
6	chr12:26341800-26348000	Weak transcription	NH-A	brain
7	chr12:26341800-26348000	Weak transcription	NHEK	skin
8	chr12:26341800-26348000	Weak transcription	Osteobl	bone
9	chr12:26343600-26348000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: