Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743574	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12315774	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316258	1.00[ASN][1000 genomes]
rs12809441	0.82[ASN][1000 genomes]
rs1480036	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs16930176	0.91[EUR][1000 genomes]
rs16930227	0.92[EUR][1000 genomes]
rs17380837	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs2343865	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343868	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35878200	0.91[EUR][1000 genomes]
rs3809138	0.82[ASN][1000 genomes]
rs55830812	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55889673	0.91[EUR][1000 genomes]
rs57252419	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58747679	0.80[ASN][1000 genomes]
rs59864950	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61914465	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61915724	0.88[EUR][1000 genomes]
rs7953277	0.91[EUR][1000 genomes]
rs7955859	1.00[ASN][1000 genomes]
rs7958409	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7976236	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978769	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs875295	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26337800-26341800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26338000-26341800	Enhancers	HMEC	breast
3	chr12:26338200-26338800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:26338200-26338800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:26338200-26339000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:26338200-26341800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:26338200-26341800	Enhancers	NHEK	skin
8	chr12:26338400-26338800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:26338400-26338800	Enhancers	Placenta	Placenta
10	chr12:26338400-26338800	Enhancers	NH-A	brain
11	chr12:26338400-26340200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr12:26338400-26341800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr12:26338400-26341800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:26338600-26338800	Enhancers	HSMM	muscle
15	chr12:26338600-26340200	Enhancers	Psoas Muscle	Psoas
16	chr12:26338600-26341000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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