Variant report

Variant	rs16930227
Chromosome Location	chr12:26312765-26312766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26312247..26313846-chr12:26314079..26315975,2	K562	blood:
2	chr12:26308692..26310316-chr12:26311328..26313517,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10743574	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12314653	0.92[EUR][1000 genomes]
rs12315774	0.92[EUR][1000 genomes]
rs16930176	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17366851	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17366886	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17464154	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17464196	0.98[ASN][1000 genomes]
rs2004824	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2343865	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2343868	0.82[EUR][1000 genomes]
rs35878200	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4963649	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4963959	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs55752345	0.98[ASN][1000 genomes]
rs55830812	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55889673	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56008051	0.98[ASN][1000 genomes]
rs56319243	0.98[ASN][1000 genomes]
rs57252419	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59864248	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs59864950	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61914465	0.93[EUR][1000 genomes]
rs61915724	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61915726	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7953277	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7958409	0.92[EUR][1000 genomes]
rs7976236	0.92[EUR][1000 genomes]
rs7978769	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs875295	0.82[CEU][hapmap];0.81[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26308000-26316800	Weak transcription	HMEC	breast
2	chr12:26310200-26316600	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:26312200-26315600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:26312400-26317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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