Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743574	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12314653	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315774	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316258	1.00[ASN][1000 genomes]
rs12809441	0.82[ASN][1000 genomes]
rs1480036	0.94[ASN][1000 genomes]
rs16930176	0.92[EUR][1000 genomes]
rs16930227	0.93[EUR][1000 genomes]
rs17380837	0.82[ASN][1000 genomes]
rs2343865	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2343868	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35878200	0.92[EUR][1000 genomes]
rs3809138	0.82[ASN][1000 genomes]
rs55830812	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55889673	0.91[EUR][1000 genomes]
rs57252419	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58747679	0.80[ASN][1000 genomes]
rs59864950	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61915724	0.89[EUR][1000 genomes]
rs7953277	0.92[EUR][1000 genomes]
rs7955859	1.00[ASN][1000 genomes]
rs7958409	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7976236	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978769	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs875295	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26330800-26337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26332400-26338200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:26336200-26338600	Weak transcription	Psoas Muscle	Psoas
4	chr12:26337200-26338400	Weak transcription	Placenta	Placenta
5	chr12:26337400-26338600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search: