Variant report

Variant	rs17385037
Chromosome Location	chr1:98585180-98585181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10158436	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1198585	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1198591	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1198592	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1198593	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1198594	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12067700	0.82[JPT][hapmap]
rs12567432	0.82[ASN][1000 genomes]
rs17372140	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17381509	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17381657	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17385603	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2391907	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2660303	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2660304	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4133804	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4423049	0.82[JPT][hapmap]
rs4456128	0.82[JPT][hapmap]
rs4506495	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4598523	0.82[JPT][hapmap]
rs61787263	0.86[ASN][1000 genomes]
rs61787319	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61787320	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61787321	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61787322	0.88[ASN][1000 genomes]
rs61787323	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6703588	0.82[JPT][hapmap]
rs963852	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv432531	chr1:98524979-98604179	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98583800-98585200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:98585000-98585200	Enhancers	Fetal Brain Male	brain
3	chr1:98585000-98585600	Enhancers	Adipose Nuclei	Adipose

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