Variant report

Variant	rs10158436
Chromosome Location	chr1:98572907-98572908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1198585	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1198591	0.85[JPT][hapmap]
rs1198592	0.85[JPT][hapmap]
rs1198593	0.85[JPT][hapmap]
rs1198594	0.85[JPT][hapmap]
rs12067700	0.85[JPT][hapmap]
rs17372140	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17381509	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17381657	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17385037	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17385603	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2391907	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2660303	0.85[JPT][hapmap]
rs2660304	0.85[JPT][hapmap]
rs4133804	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4246515	0.82[JPT][hapmap]
rs4423049	0.85[JPT][hapmap]
rs4456128	0.85[JPT][hapmap]
rs4506495	0.85[JPT][hapmap]
rs4598523	0.85[JPT][hapmap]
rs61787263	0.82[ASN][1000 genomes]
rs61787319	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61787320	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61787321	1.00[AFR][1000 genomes]
rs61787322	0.84[ASN][1000 genomes]
rs61787323	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6692580	0.85[JPT][hapmap]
rs6703588	0.85[JPT][hapmap]
rs963852	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9662870	0.85[JPT][hapmap]
rs9727976	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv432531	chr1:98524979-98604179	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98570800-98576200	Weak transcription	Hela-S3	cervix
2	chr1:98572600-98573000	ZNF genes & repeats	A549	lung
3	chr1:98572600-98573800	ZNF genes & repeats	HSMMtube	muscle
4	chr1:98572600-98574000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:98572600-98574000	ZNF genes & repeats	Dnd41	blood
6	chr1:98572600-98574200	ZNF genes & repeats	HMEC	breast
7	chr1:98572800-98574000	ZNF genes & repeats	HUVEC	blood vessel
8	chr1:98572800-98574200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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