Variant report

Variant	rs17392088
Chromosome Location	chr8:111596577-111596578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111594065..111596990-chr8:111668768..111671358,2	MCF-7	breast:
2	chr8:111575672..111578651-chr8:111595648..111598231,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10089323	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10096014	0.98[ASN][1000 genomes]
rs10100041	0.95[ASN][1000 genomes]
rs10505145	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1080305	0.83[AMR][1000 genomes]
rs12675948	0.98[ASN][1000 genomes]
rs12677768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678413	0.83[AMR][1000 genomes]
rs12681997	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13248717	0.92[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs13250438	0.88[ASN][1000 genomes]
rs13256323	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13256485	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13268467	0.82[ASN][1000 genomes]
rs1353208	0.90[ASN][1000 genomes]
rs1353211	0.93[ASN][1000 genomes]
rs1494233	0.98[ASN][1000 genomes]
rs1494242	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs16880919	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs16880943	0.83[AMR][1000 genomes]
rs16881002	0.83[AMR][1000 genomes]
rs34285191	0.83[AMR][1000 genomes]
rs34991511	0.83[AMR][1000 genomes]
rs4269512	0.92[ASN][1000 genomes]
rs4386954	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4599784	0.80[ASN][1000 genomes]
rs4602862	0.98[ASN][1000 genomes]
rs4637794	0.99[ASN][1000 genomes]
rs4735160	0.83[AMR][1000 genomes]
rs6469313	0.98[ASN][1000 genomes]
rs6469314	0.98[ASN][1000 genomes]
rs6469317	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7007361	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7460087	0.95[ASN][1000 genomes]
rs7825323	0.98[ASN][1000 genomes]
rs7828456	0.92[ASN][1000 genomes]
rs9297434	0.92[CHB][hapmap]
rs9297435	0.85[CHB][hapmap]
rs9297436	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891291	chr8:111462136-111681660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv891292	chr8:111478321-111673039	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2761460	chr8:111506457-111607147	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831422	chr8:111578949-111755170	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111592600-111597200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:111594600-111597400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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