Variant report

Variant	rs4599784
Chromosome Location	chr8:111550702-111550703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089323	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10096014	0.82[ASN][1000 genomes]
rs10100041	0.80[ASN][1000 genomes]
rs12675948	0.82[ASN][1000 genomes]
rs12677768	0.80[ASN][1000 genomes]
rs13248717	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13250438	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13268467	0.93[ASN][1000 genomes]
rs1494233	0.82[ASN][1000 genomes]
rs1494242	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs16880831	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880919	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs17392088	0.80[ASN][1000 genomes]
rs36043959	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4386954	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4424233	0.90[ASN][1000 genomes]
rs4439100	0.90[ASN][1000 genomes]
rs4602862	0.82[ASN][1000 genomes]
rs4637794	0.81[ASN][1000 genomes]
rs62526783	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469313	0.82[ASN][1000 genomes]
rs6469314	0.82[ASN][1000 genomes]
rs6469317	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs6985117	0.90[ASN][1000 genomes]
rs7007361	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7460087	0.80[ASN][1000 genomes]
rs7825323	0.82[ASN][1000 genomes]
rs9297434	0.93[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs9297435	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs9297436	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891291	chr8:111462136-111681660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv891292	chr8:111478321-111673039	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2761460	chr8:111506457-111607147	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111550600-111550800	Enhancers	Pancreas	Pancrea

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