Variant report

Variant	rs4386954
Chromosome Location	chr8:111555308-111555309
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:111365043..111367620-chr8:111553595..111556957,3	MCF-7	breast:
2	chr20:47537126..47538714-chr8:111554238..111556097,2	MCF-7	breast:
3	chr8:111551159..111553132-chr8:111554691..111557321,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124198	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089323	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10096014	0.83[ASN][1000 genomes]
rs10100041	0.81[ASN][1000 genomes]
rs12675948	0.83[ASN][1000 genomes]
rs12677768	0.83[ASN][1000 genomes]
rs13248717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13250438	0.94[ASN][1000 genomes]
rs13268467	0.97[ASN][1000 genomes]
rs1494233	0.83[ASN][1000 genomes]
rs1494242	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs16880831	0.94[ASN][1000 genomes]
rs16880919	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17392088	0.83[ASN][1000 genomes]
rs36043959	0.85[ASN][1000 genomes]
rs4424233	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4439100	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4599784	0.97[ASN][1000 genomes]
rs4602862	0.83[ASN][1000 genomes]
rs4637794	0.82[ASN][1000 genomes]
rs62526783	0.82[ASN][1000 genomes]
rs6469313	0.83[ASN][1000 genomes]
rs6469314	0.83[ASN][1000 genomes]
rs6469317	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs6985117	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7007361	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7460087	0.81[ASN][1000 genomes]
rs7825323	0.83[ASN][1000 genomes]
rs9297434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9297435	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9297436	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891291	chr8:111462136-111681660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv891292	chr8:111478321-111673039	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2761460	chr8:111506457-111607147	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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